Rh7CG328700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004520
Physical Location & Seq
Reverse (-)
36176190 .. 36176711
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG328700.1

Sequence Viewer

Length: 522 bp
ATGACGAAGAAGGAATGGCTAAATATCCTAAGTTTGACGCTGCCACAGATATGGAGAACCCTGTTTTTCGTGATAGGGATGTTATTTGCTACAAAAAATGATGTGAATGAAGCAATTAAGGAGTATTCAATCAAAAGGGGTTATGAGACAACTATAAAAAAGAATGACAAGACTAGGATGACTGCAAAGTGTATCCTAGGTTGTCCTTGGAAAATTCATGCATCTCCGAATGAAGAAGGTACGTGGCAAATCAAATCTCTGTTAAATGTGCACAACTGTATCAGGCAATATAAAAACAAGCATGTCACCTATAAGTATATTGCCAAAAAGTGGTTGGATCGGTTTAGAGATGACCCTAAGTTGTCCTTAAAAACTTTGAAATCAACTGTTAGGAGAGAAATTGAAGTGGATGTATCTCATGGTCAGTGTACTAGGGGAAGACAAGAAGCCATTAAAATAATTGAAGGAAGCTATAAAGAGCAGTATGGTAGGATATGGGAGTACTGTGCAGAAGTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

173

Amino Acids

20.53

Weight (kDa)

9.64

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 24 - 79 5.1e-13 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 330
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 3 cut(s) 241, 430, 503
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 4 cut(s) 129, 379, 404, 464
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 269
AlwI GGATC 1 cut(s) 345
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 213
AspA2I CCTAGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 298
AvrII CCTAGG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 273
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 27
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 3 cut(s) 174, 197, 432
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 1 cut(s) 41
BlnI CCTAGG 1 cut(s) 196
BlsI GCNGC 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 503
BmsI GCATC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 196, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 196, 206
BseGI GGATG 3 cut(s) 84, 183, 415
BseLI CCNNNNNNNGG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 337
BspPI GGATC 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 196, 206
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 2 cut(s) 196, 206
Bst4CI ACNGT 3 cut(s) 278, 388, 506
BstBAI YACGTR 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 29, 357
BstF5I GGATG 3 cut(s) 84, 183, 415
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 51
BsuI GTATCC 1 cut(s) 203
BtsCI GGATG 3 cut(s) 84, 183, 415
BtsIMutI CAGTG 1 cut(s) 431
CseI GACGC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 240, 429, 502
CviAII CATG 3 cut(s) 218, 302, 419
CviJI RGCY 3 cut(s) 19, 449, 471
CviKI_1 RGCY 3 cut(s) 19, 449, 471
CviQI GTAC 3 cut(s) 240, 429, 502
DdeI CTNAG 2 cut(s) 29, 357
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 196, 206
EcoT14I CCWWGG 2 cut(s) 196, 206
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 196, 206
FaeI CATG 3 cut(s) 221, 305, 422
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 3 cut(s) 217, 301, 418
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 3 cut(s) 91, 190, 422
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 3 cut(s) 174, 197, 432
GluI GCNGC 1 cut(s) 41
HgaI GACGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 221, 305, 422
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 271, 429
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 271, 429
HpyAV CCTTC 3 cut(s) 4, 230, 458
HpyCH4III ACNGT 3 cut(s) 278, 388, 506
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 185, 221, 271, 509
HpyF3I CTNAG 2 cut(s) 29, 357
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 3 cut(s) 221, 305, 422
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 2 cut(s) 74, 268
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 230
MaeI CTAG 3 cut(s) 174, 197, 432
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 19, 245, 450
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 4 cut(s) 114, 213, 399, 459
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 4 cut(s) 117, 263, 368, 453
MslI CAYNNNNRTG 1 cut(s) 49
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 221, 305, 422
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 243
RsaI GTAC 3 cut(s) 241, 430, 503
RsaNI GTAC 3 cut(s) 240, 429, 502
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 4 cut(s) 117, 263, 368, 453
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 337
ScaI AGTACT 1 cut(s) 503
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 202, 241, 245, 311, 473, 521
SfaNI GCATC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 4 cut(s) 114, 213, 399, 459
SspMI CTAG 3 cut(s) 174, 197, 432
StyI CCWWGG 2 cut(s) 196, 206
TaaI ACNGT 3 cut(s) 278, 388, 506
TaiI ACGT 1 cut(s) 245
TasI AATT 4 cut(s) 114, 213, 399, 459
TatI WGTACW 2 cut(s) 428, 501
Tru1I TTAA 4 cut(s) 117, 263, 368, 453
Tru9I TTAA 4 cut(s) 117, 263, 368, 453
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 123, 206, 246
TspRI CASTG 1 cut(s) 431
Van91I CCANNNNNTGG 1 cut(s) 330
VneI GTGCAC 1 cut(s) 269
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 196
XspI CTAG 3 cut(s) 174, 197, 432
ZrmI AGTACT 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.