Rh7BG415800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004520
Physical Location & Seq
Forward (+)
46855886 .. 46856374
489 bp
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UTR
Exon/CDS
Intron
Rh7BG415800.1

Sequence Viewer

Length: 489 bp
ATGGCTAAATATCCTGAGTTTAACACTGCCACAGATATGGAGAACCCTGTTTTCATGATAAGGATGTTATTTGCTACAAAAAATGATGTGAAGGAATCAATTAAGGAGTATTCAACCAAAGGGGGTTATAAGACAACTATAAAAAAGAATGACAAGACTAGGATGATTGGAAAGTGTATCCCAGCTTGTCCTTGGAAAATTCATGCATCTCCGAACGAAGAAGGTACGTGGCAAATCAAATCTCTGTTTAATGTGCACAACTGCAGCAGGCAATATAAAAACAAGCATGTCACCTATAAGTATATTGCCAAAAAGTGGTTGGATCGGTTTAGAGATGACCCTAAGTTGTCCTTAAAAACTTTGAAATCAACTGTCAGGAGAGAAATTGAAGTGGATGTATCTCATGGTCAGTGTACTAGGGGAAGACAAGAAGCCATTAAAATAATTGAAGGAAGCTATAAAGAGCAGTATGGTAGGATATGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

162

Amino Acids

19.09

Weight (kDa)

9.61

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 24 - 74 3.8e-08 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 315
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 2 cut(s) 226, 415
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 4 cut(s) 114, 364, 389, 449
AluBI AGCT 2 cut(s) 185, 456
AluI AGCT 2 cut(s) 185, 456
Alw21I GWGCWC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 1 cut(s) 330
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 276
BciVI GTATCC 1 cut(s) 188
BfaI CTAG 2 cut(s) 159, 417
BfmI CTRYAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 69, 168, 400
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 6
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 1 cut(s) 276
BseYI CCCAGC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 266
BspPI GGATC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 373
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 15, 342
BstF5I GGATG 3 cut(s) 69, 168, 400
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 69, 168, 400
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 416
Cac8I GCNNGC 1 cut(s) 269
CciI TCATGA 1 cut(s) 54
Csp6I GTAC 2 cut(s) 225, 414
CviAII CATG 4 cut(s) 55, 203, 287, 404
CviJI RGCY 4 cut(s) 5, 185, 434, 456
CviKI_1 RGCY 4 cut(s) 5, 185, 434, 456
CviQI GTAC 2 cut(s) 225, 414
DdeI CTNAG 2 cut(s) 15, 342
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 4 cut(s) 58, 206, 290, 407
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FatI CATG 4 cut(s) 54, 202, 286, 403
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 3 cut(s) 76, 175, 407
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 2 cut(s) 159, 417
GluI GCNGC 1 cut(s) 265
GsaI CCCAGC 1 cut(s) 185
Hin1II CATG 4 cut(s) 58, 206, 290, 407
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 256, 414
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 3 cut(s) 14, 55, 376
Hpy8I GTNNAC 2 cut(s) 256, 414
HpyAV CCTTC 3 cut(s) 85, 215, 443
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 206, 256, 264
HpyF3I CTNAG 2 cut(s) 15, 342
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 4 cut(s) 58, 206, 290, 407
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 5 cut(s) 27, 60, 195, 253, 361
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 1 cut(s) 215
MaeI CTAG 2 cut(s) 159, 417
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 2 cut(s) 230, 435
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 99, 198, 384, 444
MmeI TCCRAC 1 cut(s) 300
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 5 cut(s) 21, 102, 249, 353, 438
MslI CAYNNNNRTG 1 cut(s) 35
NdeII GATC 1 cut(s) 322
NlaIII CATG 4 cut(s) 58, 206, 290, 407
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 1 cut(s) 290
PagI TCATGA 1 cut(s) 54
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 315
PkrI GCNGC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 228
PsiI TTATAA 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 266
RsaI GTAC 2 cut(s) 226, 415
RsaNI GTAC 2 cut(s) 225, 414
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 5 cut(s) 21, 102, 249, 353, 438
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 258
SetI ASST 5 cut(s) 187, 226, 230, 296, 458
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 4 cut(s) 99, 198, 384, 444
SspMI CTAG 2 cut(s) 159, 417
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 230
TasI AATT 4 cut(s) 99, 198, 384, 444
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 5 cut(s) 21, 102, 249, 353, 438
Tru9I TTAA 5 cut(s) 21, 102, 249, 353, 438
TscAI CASTG 2 cut(s) 31, 416
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 43, 191
TspRI CASTG 2 cut(s) 31, 416
Van91I CCANNNNNTGG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 254
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 2 cut(s) 189, 316
XspI CTAG 2 cut(s) 159, 417
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.