Rw2G035330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004520
Physical Location & Seq
Reverse (-)
58277216 .. 58282007
4792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035330.1

Sequence Viewer

Length: 1284 bp
ATGCAAGATGACATTGTCTCAGAGAAAGAATATAATTCAGATGATTTGAACAGTCCGGTGAATTCAGAGGATGATGAAGAAGGAATGAACCTTGTTTTTGTTATAGGGATGTTATTTGTTACAAAAAATGATGTGAATGAAGCAATTAAGGAGTATTCAATCAAAGGGGGTTATGAGACAACTATAAAAAAGAATGACAAGACTAGGATGACTGCAAAGTCAGACAATATAAAAACAAGCATGTCACCTATAAGTATATTGCCAAAAAATGGTTGGATCGATTTAGAAATAGATGACCCTAAGTTATCCTTAAAAACTTTGAAATCGACTGTGAGGAGAGAAATTGAAGTGGATGTATCTCATGGTCAGTGTACTAGGGGAAGACAAGAAGCCATTAAAATAATTGAAGGAAGTTATGAAGAGCAGTATAGTAGGACATGGGAGTACTGTGCAGAAGTGAGGCAAACCAATAAGAATAGCAGTATGTTTGTGAGGGCTAATCCTCCATACTTTCAGAGGCTTTTTGTGTGTCTTGAAGATTGTACGAACAGCTTCAAAAAAGGGTGCAGGCCAATTATAGGAGTCGATGGATGTCATCTTAAAGGAGCATTTGGAGGGCAACTACTAGCTGCAGTTGGCATTGATGCCAATGACAATATGTATCCAATAGCCTATGCAGTGGTGGAGAGTGAAGATAAGGAAACATGGTGTTGGTTTTTACAACTTCTAATTGAAGATCTTGGACCTTGTGTGAGACACTTGTATGGGAATTTCAAAAAGCTTCACAAAGGTAAGGCTTTGAAAGACTTGTTGTGTAGTGCTACTAAGGCACCTAATAATTTGGTAGGAAAAGATCCTAGAAGATGGGCTAGGTCTAGGTTTACAAGCAGATTAAAGTGTGATATGCTTTTGAATAACCTATGTGAGACTTTCAACAGTTGGATTCTTACTGCTAGAGACCAGCCGATATTAACCATGTTGGAGATGATAAGGTGTAATTTAATGAGGAGATATCAAAGTATTGGCAGCATGCTTGGCATAATAGAAGAGTCTAGCACTCTATTGTCAGTATTGTGTAAGCTTGGAATGATTTTCAATTGTGCATTCATATATGAATTTGCTGCATTTCAGTGTTTTCTCTCATCTATCTTACCAGTCCAATTAATATTTGATGGCAAACTATTGCCTCAACTTGAACACTTGCAATTGAGAAAATATCTGGAAATAGAGCTTGCCTCATATTTGTTTAAACGTAGCATAAATACACAAACAAAAATCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

427

Amino Acids

48.78

Weight (kDa)

6.93

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 193 - 242 5.4e-09 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 269
AclWI GGATC 2 cut(s) 284, 848
AcsI RAATTY 3 cut(s) 61, 769, 1115
AfaI GTAC 3 cut(s) 373, 446, 544
AfiI CCNNNNNNNGG 2 cut(s) 269, 578
AluBI AGCT 5 cut(s) 552, 629, 781, 1081, 1231
AluI AGCT 5 cut(s) 552, 629, 781, 1081, 1231
Alw26I GTCTC 5 cut(s) 22, 170, 748, 920, 951
AlwI GGATC 2 cut(s) 284, 848
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 3 cut(s) 629, 1026, 1121
ApoI RAATTY 3 cut(s) 61, 769, 1115
AseI ATTAAT 1 cut(s) 1163
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 2 cut(s) 70, 237
AvaII GGWCC 1 cut(s) 743
BanI GGYRCC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 616, 1038, 1108
BccI CCATC 3 cut(s) 581, 858, 1166
BciVI GTATCC 1 cut(s) 672
BcoDI GTCTC 5 cut(s) 22, 170, 748, 920, 951
BfaI CTAG 8 cut(s) 204, 375, 626, 858, 870, 876, 954, 1053
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 1 cut(s) 672
BglII AGATCT 1 cut(s) 736
BisI GCNGC 3 cut(s) 630, 1027, 1122
BlsI GCNGC 3 cut(s) 631, 1028, 1123
BmcAI AGTACT 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 1 cut(s) 831
BmsI GCATC 1 cut(s) 634
BpiI GAAGAC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
Bsa29I ATCGAT 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 951
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 578
Bse1I ACTGG 1 cut(s) 1154
BseCI ATCGAT 1 cut(s) 279
BseGI GGATG 5 cut(s) 76, 114, 213, 358, 596
BseLI CCNNNNNNNGG 2 cut(s) 269, 578
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 1154
BseRI GAGGAG 2 cut(s) 349, 1021
BseXI GCAGC 3 cut(s) 616, 1038, 1108
BsgI GTGCAG 2 cut(s) 471, 586
BshFI GGCC 1 cut(s) 571
BshNI GGYRCC 1 cut(s) 829
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 269, 578
BsmAI GTCTC 5 cut(s) 22, 170, 748, 920, 951
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 1 cut(s) 571
Bso31I GGTCTC 1 cut(s) 951
Bsp143I GATC 3 cut(s) 276, 736, 853
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 831
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 284, 848
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 829
BspTNI GGTCTC 1 cut(s) 951
BsrI ACTGG 1 cut(s) 1154
BssMI GATC 3 cut(s) 276, 736, 853
Bst4CI ACNGT 4 cut(s) 53, 331, 449, 938
Bst6I CTCTTC 2 cut(s) 414, 1041
BstC8I GCNNGC 3 cut(s) 569, 1031, 1233
BstDEI CTNAG 3 cut(s) 19, 300, 825
BstF5I GGATG 5 cut(s) 76, 114, 213, 358, 596
BstKTI GATC 3 cut(s) 279, 739, 856
BstMAI GTCTC 5 cut(s) 22, 170, 748, 920, 951
BstMBI GATC 3 cut(s) 276, 736, 853
BstMWI GCNNNNNNNGC 2 cut(s) 827, 1035
BstNSI RCATGY 2 cut(s) 244, 1033
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 616, 1038, 1108
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 2 cut(s) 736, 853
BstYI RGATCY 2 cut(s) 736, 853
Bsu15I ATCGAT 1 cut(s) 279
BsuI GTATCC 1 cut(s) 672
BsuRI GGCC 1 cut(s) 571
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 5 cut(s) 76, 114, 213, 358, 596
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 3 cut(s) 374, 684, 1136
Cac8I GCNNGC 3 cut(s) 569, 1031, 1233
Cfr13I GGNCC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 3 cut(s) 372, 445, 543
CviAII CATG 6 cut(s) 241, 362, 438, 705, 976, 1030
CviQI GTAC 3 cut(s) 372, 445, 543
DdeI CTNAG 3 cut(s) 19, 300, 825
DpnI GATC 3 cut(s) 278, 738, 855
DpnII GATC 3 cut(s) 276, 736, 853
DraI TTTAAA 1 cut(s) 1249
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 414, 1041
EarI CTCTTC 2 cut(s) 414, 1041
Eco31I GGTCTC 1 cut(s) 951
Eco32I GATATC 1 cut(s) 1013
Eco47I GGWCC 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 61
EcoRV GATATC 1 cut(s) 1013
FaeI CATG 6 cut(s) 244, 365, 441, 708, 979, 1033
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 6 cut(s) 240, 361, 437, 704, 975, 1029
Fnu4HI GCNGC 3 cut(s) 630, 1027, 1122
FokI GGATG 5 cut(s) 83, 121, 220, 365, 603
Fsp4HI GCNGC 3 cut(s) 630, 1027, 1122
FspBI CTAG 8 cut(s) 204, 375, 626, 858, 870, 876, 954, 1053
GluI GCNGC 3 cut(s) 630, 1027, 1122
HaeIII GGCC 1 cut(s) 571
HapII CCGG 1 cut(s) 56
Hin1II CATG 6 cut(s) 244, 365, 441, 708, 979, 1033
HindIII AAGCTT 2 cut(s) 779, 1079
HinfI GANTC 3 cut(s) 582, 943, 1049
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 70, 237
Hpy166II GTNNAC 2 cut(s) 372, 882
Hpy188I TCNGA 5 cut(s) 22, 40, 67, 223, 516
Hpy188III TCNNGA 2 cut(s) 533, 1220
Hpy8I GTNNAC 2 cut(s) 372, 882
HpyAV CCTTC 2 cut(s) 74, 401
HpyCH4III ACNGT 4 cut(s) 53, 331, 449, 938
HpyCH4IV ACGT 1 cut(s) 1252
HpyCH4V TGCA 9 cut(s) 4, 215, 452, 567, 632, 677, 1103, 1124, 1204
HpyF10VI GCNNNNNNNGC 2 cut(s) 827, 1035
HpyF3I CTNAG 3 cut(s) 19, 300, 825
HpySE526I ACGT 1 cut(s) 1252
Hsp92II CATG 6 cut(s) 244, 365, 441, 708, 979, 1033
Kzo9I GATC 3 cut(s) 276, 736, 853
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 605
LpnPI CCDG 5 cut(s) 69, 553, 974, 1167, 1205
Lsp1109I GCAGC 3 cut(s) 616, 1038, 1108
LweI GCATC 1 cut(s) 634
MaeI CTAG 8 cut(s) 204, 375, 626, 858, 870, 876, 954, 1053
MaeII ACGT 1 cut(s) 1252
MaeIII GTNAC 2 cut(s) 118, 243
MalI GATC 3 cut(s) 278, 738, 855
MboI GATC 3 cut(s) 276, 736, 853
MboII GAAGA 8 cut(s) 89, 393, 431, 548, 704, 746, 873, 1058
MfeI CAATTG 2 cut(s) 1096, 1205
MflI RGATCY 2 cut(s) 736, 853
MlyI GAGTC 2 cut(s) 591, 1058
MmeI TCCRAC 3 cut(s) 254, 920, 960
MroXI GAANNNNTTC 1 cut(s) 551
MslI CAYNNNNRTG 2 cut(s) 762, 1129
MspI CCGG 1 cut(s) 56
MssI GTTTAAAC 1 cut(s) 1249
MunI CAATTG 2 cut(s) 1096, 1205
Mva1269I GAATGC 1 cut(s) 1103
MwoI GCNNNNNNNGC 2 cut(s) 827, 1035
NdeII GATC 3 cut(s) 276, 736, 853
NlaIII CATG 6 cut(s) 244, 365, 441, 708, 979, 1033
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 244, 1033
PaeI GCATGC 1 cut(s) 1033
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 943
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 631, 1028, 1123
PleI GAGTC 2 cut(s) 590, 1057
PmeI GTTTAAAC 1 cut(s) 1249
PpsI GAGTC 2 cut(s) 590, 1057
PshBI ATTAAT 1 cut(s) 1163
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 2 cut(s) 736, 853
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 3 cut(s) 373, 446, 544
RsaNI GTAC 3 cut(s) 372, 445, 543
RseI CAYNNNNRTG 2 cut(s) 762, 1129
SapI GCTCTTC 1 cut(s) 414
SatI GCNGC 3 cut(s) 630, 1027, 1122
Sau3AI GATC 3 cut(s) 276, 736, 853
Sau96I GGNCC 1 cut(s) 743
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 2 cut(s) 591, 1058
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 2 cut(s) 762, 1129
SphI GCATGC 1 cut(s) 1033
SspI AATATT 1 cut(s) 1167
SspMI CTAG 8 cut(s) 204, 375, 626, 858, 870, 876, 954, 1053
TaaI ACNGT 4 cut(s) 53, 331, 449, 938
TaiI ACGT 1 cut(s) 1255
TaqI TCGA 3 cut(s) 279, 326, 585
TatI WGTACW 2 cut(s) 371, 444
TfiI GAWTC 1 cut(s) 943
TscAI CASTG 3 cut(s) 374, 684, 1136
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 3 cut(s) 629, 1026, 1121
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 6 cut(s) 90, 101, 153, 432, 1096, 1128
TspRI CASTG 3 cut(s) 374, 684, 1136
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 743
VspI ATTAAT 1 cut(s) 1163
XapI RAATTY 3 cut(s) 61, 769, 1115
XceI RCATGY 2 cut(s) 244, 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 8 cut(s) 204, 375, 626, 858, 870, 876, 954, 1053
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.