FvH4_1g10330

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002366
Physical Location & Seq
Reverse (-)
5635397 .. 5637216
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10330.t4

Sequence Viewer

Length: 576 bp
ATGGCAGGTGCCGGAAAATGCTTGCTGGTGACTGGACCTCCTGGTGTGGGTAAAACCACTCTAATAGTCAAAGTCTTTGAAACCCTAAAATCATCATACCCCAACTTAAAGATTCAGGGTTTCTACACCAGTGAGGTTAGACAAGGAGGTGATCGCGTTGGCTTCCAGGTGGTCACGTTAGACGGCCGTACCGCTCCGCTTGCTTCCTCCACCATTTCCAGCTTAGAATCGCTGAGATGGCCCACTGTCGGGAAGTTCAAAGTTGATGTTGCGTCGTTCGAGTCCCTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTGTTTGTCATCGATGAAGTTGGTAAGATGGAGTTGTTCAGTTCATCTTTCTTCCCTTCCGTCTTAAGAGTGCTGGAATCCAATATTCCGGTCTTGGCGTCAGTTCCAGTTCCAAAAGTTGGCCGTGATATACCTGCAGTTGCAAGGTTAAAGAATCATCCGGGTGCAACAATTTTTACACTGAGCCAAAGTAACCGAGATGCCACTAAAGAACTGATATACTCCCAATTGGTAGACTTACTGAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

192

Amino Acids

20.71

Weight (kDa)

9.04

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 38 - 205 1.3e-41 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 2 cut(s) 295, 466
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 192, 197
AcoI YGGCCR 2 cut(s) 184, 445
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 80, 259
AjnI CCWGG 3 cut(s) 40, 165, 285
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 3 cut(s) 184, 239, 445
AspS9I GGNCC 2 cut(s) 35, 240
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 40, 161
AvaII GGWCC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanI GGYRCC 1 cut(s) 8
BccI CCATC 2 cut(s) 231, 346
BceAI ACGGC 3 cut(s) 171, 199, 432
BciT130I CCWGG 3 cut(s) 42, 167, 287
BcnI CCSGG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 388
BfuAI ACCTGC 2 cut(s) 295, 466
Bme1390I CCNGG 4 cut(s) 42, 167, 287, 486
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 240
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 4 cut(s) 42, 167, 287, 486
BmsI GCATC 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
Bse1I ACTGG 3 cut(s) 37, 129, 431
BseBI CCWGG 3 cut(s) 42, 167, 287
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BseMII CTCAG 3 cut(s) 224, 497, 557
BseNI ACTGG 3 cut(s) 37, 129, 431
BseX3I CGGCCG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 186, 241, 447
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 3 cut(s) 12, 413, 485
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 3 cut(s) 186, 241, 447
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 2 cut(s) 192, 197
BspANI GGCC 3 cut(s) 186, 241, 447
BspCNI CTCAG 3 cut(s) 225, 498, 558
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 2 cut(s) 295, 466
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 194
BsrI ACTGG 3 cut(s) 37, 129, 431
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 422
Bst2UI CCWGG 3 cut(s) 42, 167, 287
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 422
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 23, 201
BstDEI CTNAG 4 cut(s) 223, 233, 506, 566
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 200, 238
BstNI CCWGG 3 cut(s) 42, 167, 287
BstSCI CCNGG 4 cut(s) 40, 165, 285, 484
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 156
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 3 cut(s) 186, 241, 447
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 136, 243, 503
BveI ACCTGC 2 cut(s) 295, 466
Cac8I GCNNGC 2 cut(s) 23, 201
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 35, 240
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 2 cut(s) 261, 411
Csp6I GTAC 1 cut(s) 189
CviJI RGCY 6 cut(s) 162, 186, 222, 241, 447, 510
CviKI_1 RGCY 6 cut(s) 162, 186, 222, 241, 447, 510
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 4 cut(s) 223, 233, 506, 566
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 184, 445
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 40, 165, 285
FaiI YATR 3 cut(s) 97, 455, 544
FaqI GGGAC 1 cut(s) 268
FblI GTMKAC 1 cut(s) 558
FokI GGATG 1 cut(s) 468
HaeIII GGCC 3 cut(s) 186, 241, 447
HapII CCGG 3 cut(s) 12, 413, 485
HgaI GACGC 2 cut(s) 261, 411
Hin1I GRCGYC 1 cut(s) 422
HinfI GANTC 5 cut(s) 112, 227, 281, 401, 478
HpaII CCGG 3 cut(s) 12, 413, 485
HphI GGTGA 2 cut(s) 40, 161
Hpy166II GTNNAC 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 250, 296
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 304, 461, 467, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 238
HpyF3I CTNAG 4 cut(s) 223, 233, 506, 566
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 422
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 199
LweI GCATC 1 cut(s) 514
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 3 cut(s) 28, 172, 515
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 194
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 326, 367
MfeI CAATTG 1 cut(s) 551
MluCI AATT 3 cut(s) 299, 495, 551
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 4 cut(s) 48, 127, 140, 217
MseI TTAA 3 cut(s) 107, 389, 473
MslI CAYNNNNRTG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 3 cut(s) 12, 413, 485
MspR9I CCNGG 4 cut(s) 42, 167, 287, 486
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 3 cut(s) 42, 167, 287
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 200, 238
NciI CCSGG 1 cut(s) 486
NdeII GATC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 28, 172
PfeI GAWTC 4 cut(s) 112, 227, 401, 478
PflMI CCANNNNNTGG 1 cut(s) 443
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 40, 165, 285
PspGI CCWGG 3 cut(s) 40, 165, 285
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 35, 240
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 107, 389, 473
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 35, 240
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 42, 167, 287, 486
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 3 cut(s) 299, 495, 551
SsiI CCGC 2 cut(s) 192, 197
SspI AATATT 1 cut(s) 409
StyD4I CCNGG 4 cut(s) 40, 165, 285, 484
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 279, 336
TasI AATT 3 cut(s) 299, 495, 551
TfiI GAWTC 4 cut(s) 112, 227, 401, 478
Tru1I TTAA 3 cut(s) 107, 389, 473
Tru9I TTAA 3 cut(s) 107, 389, 473
TscAI CASTG 3 cut(s) 136, 250, 510
TseFI GTSAC 2 cut(s) 28, 172
Tsp45I GTSAC 2 cut(s) 28, 172
TspDTI ATGAA 2 cut(s) 354, 357
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 3 cut(s) 136, 250, 510
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.