RchiOBHm_Chr5g0015201

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002366
Physical Location & Seq
Reverse (-)
10518885 .. 10521797
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29562

Sequence Viewer

Length: 237 bp
ATGGCCCACTGTGGGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATTGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATGTTCCAGTCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGCGATATACCAGCAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

78

Amino Acids

8.4

Weight (kDa)

4.72

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 6 - 68 2.8e-15 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 12, 13, 209
AflII CTTAAG 1 cut(s) 154
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 2 cut(s) 3, 211
ApeKI GCWGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 4
BccI CCATC 1 cut(s) 112
BfrI CTTAAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 2 cut(s) 214, 228
BlsI GCNGC 2 cut(s) 215, 229
BmgT120I GGNCC 1 cut(s) 4
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 13, 209
Bse1I ACTGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 12, 13, 209
BseNI ACTGG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 5, 213
BslI CCNNNNNNNGG 3 cut(s) 12, 13, 209
BsnI GGCC 2 cut(s) 5, 213
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 5, 213
BspFNI CGCG 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 216
BstUI CGCG 1 cut(s) 216
BsuRI GGCC 2 cut(s) 5, 213
BtsIMutI CAGTG 1 cut(s) 7
BveI ACCTGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 27, 177
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 3 cut(s) 5, 213, 230
CviKI_1 RGCY 3 cut(s) 5, 213, 230
CviQI GTAC 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaiI YATR 2 cut(s) 221, 235
Fnu4HI GCNGC 2 cut(s) 214, 228
Fsp4HI GCNGC 2 cut(s) 214, 228
GluI GCNGC 2 cut(s) 214, 228
HaeIII GGCC 2 cut(s) 5, 213
HgaI GACGC 2 cut(s) 27, 177
Hin1I GRCGYC 1 cut(s) 188
HinfI GANTC 2 cut(s) 47, 167
Hpy188III TCNNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 56, 75, 149, 159, 192
MboII GAAGA 2 cut(s) 92, 133
MluCI AATT 2 cut(s) 65, 198
MlyI GAGTC 1 cut(s) 56
MseI TTAA 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 154
MvnI CGCG 1 cut(s) 216
PfeI GAWTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 215, 229
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 214, 228
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 56
SetI ASST 3 cut(s) 75, 93, 232
SgeI CNNG 8 cut(s) 64, 74, 83, 158, 176, 191, 196, 227
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 2 cut(s) 65, 198
SsiI CCGC 1 cut(s) 214
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 11
TasI AATT 2 cut(s) 65, 198
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 14
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 120, 123
TspRI CASTG 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.