Rw2G037870

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002366
Physical Location & Seq
Forward (+)
62504233 .. 62507244
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037870.1

Sequence Viewer

Length: 423 bp
ATGGCAAGAGGTGAGGTTAGACAAGGAGGTGAGAGAGTTGGATTCCAGGTGGTCACATTAGATGGCCATACCGCTCCGCTTGCCTCATCCATCATTTCCAGCCCTGAATCTTTGAGATGGCCCACAGTGGGGAAGTACAAAGTAGGTGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTAAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATCGATGAAGTCGGTAAGATGGAGTTGTTTGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATCTTCCAGTCTTGGCGTCAGTTCCGATTCCAAAAGTTGGCCTCGATATACCAACAGGCCTGGCCAAGACTACGGACGACCATGGTGCATCTTTGACTTTATCAAAAATGTCTCTTGACACGGTATACAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

140

Amino Acids

15.03

Weight (kDa)

5.65

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 5 - 107 2e-22 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 411
AciI CCGC 2 cut(s) 72, 77
AcoI YGGCCR 2 cut(s) 64, 348
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 128, 129, 323
AflII CTTAAG 1 cut(s) 268
AjnI CCWGG 2 cut(s) 45, 345
Alw26I GTCTC 1 cut(s) 402
AoxI GGCC 5 cut(s) 64, 119, 325, 343, 348
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 23, 41
BalI TGGCCA 2 cut(s) 66, 350
BccI CCATC 4 cut(s) 56, 98, 111, 226
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 2 cut(s) 47, 347
BcoDI GTCTC 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 47, 347
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 47, 347
BmsI GCATC 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 165, 367
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 129, 323
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 47, 347
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 165, 367
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 3 cut(s) 128, 129, 323
BseNI ACTGG 1 cut(s) 293
BshFI GGCC 5 cut(s) 66, 121, 327, 345, 350
BshVI ATCGAT 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 128, 129, 323
BsmAI GTCTC 1 cut(s) 402
BsnI GGCC 5 cut(s) 66, 121, 327, 345, 350
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 2 cut(s) 72, 77
BspANI GGCC 5 cut(s) 66, 121, 327, 345, 350
BspDI ATCGAT 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 165, 367
BssNAI GTATAC 1 cut(s) 412
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 2 cut(s) 165, 367
Bst1107I GTATAC 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 47, 347
Bst4CI ACNGT 2 cut(s) 127, 409
BstACI GRCGYC 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 402
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 47, 347
BstSCI CCNGG 2 cut(s) 45, 345
BstZ17I GTATAC 1 cut(s) 412
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 5 cut(s) 66, 121, 327, 345, 350
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 2 cut(s) 141, 291
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 368
CviJI RGCY 6 cut(s) 66, 102, 121, 327, 345, 350
CviKI_1 RGCY 6 cut(s) 66, 102, 121, 327, 345, 350
CviQI GTAC 1 cut(s) 136
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 2 cut(s) 64, 348
Eco130I CCWWGG 2 cut(s) 165, 367
Eco147I AGGCCT 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 45, 345
EcoT14I CCWWGG 2 cut(s) 165, 367
ErhI CCWWGG 2 cut(s) 165, 367
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 69, 335, 369, 412
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 411
FokI GGATG 1 cut(s) 73
HaeIII GGCC 5 cut(s) 66, 121, 327, 345, 350
HgaI GACGC 2 cut(s) 141, 291
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 371
HinfI GANTC 5 cut(s) 42, 107, 161, 281, 313
HphI GGTGA 2 cut(s) 23, 41
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 2 cut(s) 312, 422
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 127, 409
HpyCH4V TGCA 2 cut(s) 184, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 371
LmnI GCTCC 1 cut(s) 79
LweI GCATC 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 52
MbiI CCGCTC 1 cut(s) 74
MboII GAAGA 3 cut(s) 206, 247, 281
MlsI TGGCCA 2 cut(s) 66, 350
MluCI AATT 1 cut(s) 179
MluNI TGGCCA 2 cut(s) 66, 350
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 4 cut(s) 7, 20, 94, 338
Mox20I TGGCCA 2 cut(s) 66, 350
MscI TGGCCA 2 cut(s) 66, 350
MseI TTAA 1 cut(s) 269
Msp20I TGGCCA 2 cut(s) 66, 350
MspCI CTTAAG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 47, 347
MvaI CCWGG 2 cut(s) 47, 347
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 367
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 52
PceI AGGCCT 1 cut(s) 345
PfeI GAWTC 4 cut(s) 42, 107, 281, 313
PflMI CCANNNNNTGG 1 cut(s) 323
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 45, 345
PspGI CCWGG 2 cut(s) 45, 345
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 47, 347
SetI ASST 7 cut(s) 13, 18, 31, 51, 148, 189, 207
SfaNI GCATC 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 345
SsiI CCGC 2 cut(s) 72, 77
StuI AGGCCT 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 45, 345
StyI CCWWGG 2 cut(s) 165, 367
TaaI ACNGT 2 cut(s) 127, 409
TaqI TCGA 2 cut(s) 216, 330
TasI AATT 1 cut(s) 179
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 4 cut(s) 42, 107, 281, 313
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 234, 237
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 323
Vha464I CTTAAG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.