RchiOBHm_Chr5g0047551

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002366
Physical Location & Seq
Forward (+)
44034664 .. 44035276
613 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32543

Sequence Viewer

Length: 261 bp
ATGTTTACAATCCCTGAATCTTTGAGATGGCCCACTGTGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTACAGGTAAGAGAAGATACTGACCTATTTGTCATCGTTGAAGTCGATAAGATGGAGTTGTTTGGTTCATCTTACTTCCCTGCTGTCTTAAGAGTGCTAGAATCCAATGTTCCAGTCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGCGATATACCAGCAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

86

Amino Acids

9.51

Weight (kDa)

4.61

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 10 - 76 3.6e-11 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 47, 256
AfiI CCNNNNNNNGG 3 cut(s) 38, 39, 233
AflII CTTAAG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 2 cut(s) 29, 235
AspS9I GGNCC 1 cut(s) 30
BccI CCATC 2 cut(s) 21, 136
BfaI CTAG 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 39, 233
Bse1I ACTGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 38, 39, 233
BseNI ACTGG 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 31, 237
BslI CCNNNNNNNGG 3 cut(s) 38, 39, 233
BsnI GGCC 2 cut(s) 31, 237
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 31, 237
BspFNI CGCG 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 212
BstAFI CTTAAG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 240
BstUI CGCG 1 cut(s) 240
BsuRI GGCC 2 cut(s) 31, 237
BtsIMutI CAGTG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 2 cut(s) 51, 201
Csp6I GTAC 2 cut(s) 46, 255
CviJI RGCY 2 cut(s) 31, 237
CviKI_1 RGCY 2 cut(s) 31, 237
CviQI GTAC 2 cut(s) 46, 255
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 2 cut(s) 245, 259
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 188
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 2 cut(s) 31, 237
HgaI GACGC 2 cut(s) 51, 201
Hin1I GRCGYC 1 cut(s) 212
HinfI GANTC 3 cut(s) 17, 71, 191
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 27, 80, 99, 183, 216, 237
MaeI CTAG 1 cut(s) 188
MboII GAAGA 1 cut(s) 116
MluCI AATT 2 cut(s) 89, 222
MlyI GAGTC 1 cut(s) 80
MseI TTAA 1 cut(s) 179
MspCI CTTAAG 1 cut(s) 178
MvnI CGCG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 2 cut(s) 17, 191
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 47, 256
RsaNI GTAC 2 cut(s) 46, 255
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 80
SetI ASST 3 cut(s) 99, 117, 256
SgeI CNNG 9 cut(s) 26, 88, 98, 107, 182, 200, 215, 220, 251
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 2 cut(s) 89, 222
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 89, 222
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 17, 191
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 178
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.