RchiOBHm_Chr7g0209931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002366
Physical Location & Seq
Forward (+)
27503350 .. 27507627
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18786

Sequence Viewer

Length: 417 bp
ATGGGACCGCTACATGTTTTCTACAACTGTATTTGCTTGAATGAGATGGCAAGGCAAGCTGGGCCAACTGAGACTGCAAGTTGTCACAAAGAGACCGGGAGAGGTGTCTTCTGGGTCTTTTATGAGAGGAAGAGGTCTTCTGCGAGATTACGGAAAGAAGAAAAGGGATGTGAGAGGTCTTCTGCGAGAGACATGCACAGAAAGAAGAAGAGGGGAATTCACATCGTGAGACTGATCGGAGAGAGAAAGAGAAGAGGGGGACGAGAAGAAGATGAAGAAGAGGAATCTGGATTGCCCGACATAGAGAGAAAGAGAAGTGCGCCGATTAGGTCCTCCATAGGCAGAAGGAGTTTCTGGGTATTTTACTTTTCCACTTCTACCAGAAGCATGTACGATTATTTCTGTATTCTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.33

Weight (kDa)

9.92

Isoelectric Point (pI)

99.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 4 cut(s) 65, 86, 183, 223
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 5, 62, 330
AsuC2I CCSGG 1 cut(s) 97
AvaII GGWCC 2 cut(s) 5, 330
BbsI GAAGAC 3 cut(s) 100, 129, 171
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 4 cut(s) 65, 86, 183, 223
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 5, 330
BmgT120I GGNCC 3 cut(s) 5, 62, 330
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 97
BpiI GAAGAC 3 cut(s) 100, 129, 171
BpuMI CCSGG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 86
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 18, 273
BsmAI GTCTC 4 cut(s) 65, 86, 183, 223
BsmFI GGGAC 2 cut(s) 18, 273
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 86
BssMI GATC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 4 cut(s) 125, 203, 247, 273
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 4 cut(s) 65, 86, 183, 223
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 56, 61
BstNSI RCATGY 3 cut(s) 17, 196, 391
BstSCI CCNGG 1 cut(s) 95
BstV2I GAAGAC 3 cut(s) 100, 129, 171
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 57
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 5, 62, 330
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 14, 193, 388
CviJI RGCY 2 cut(s) 59, 64
CviKI_1 RGCY 2 cut(s) 59, 64
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 226
Eam1104I CTCTTC 4 cut(s) 125, 203, 247, 273
EarI CTCTTC 4 cut(s) 125, 203, 247, 273
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 5, 330
EcoO109I RGGNCCY 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 216
FaeI CATG 3 cut(s) 17, 196, 391
FaiI YATR 6 cut(s) 15, 123, 194, 302, 338, 389
FaqI GGGAC 2 cut(s) 18, 273
FatI CATG 3 cut(s) 13, 192, 387
FokI GGATG 1 cut(s) 180
GlaI GCGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 322
Hin1II CATG 3 cut(s) 17, 196, 391
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 1 cut(s) 284
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 2 cut(s) 226, 288
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 77, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 61
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 3 cut(s) 17, 196, 391
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 6 cut(s) 45, 97, 109, 273, 340, 394
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MluCI AATT 1 cut(s) 216
MnlI CCTC 8 cut(s) 95, 120, 126, 168, 204, 248, 274, 343
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 56, 61
NciI CCSGG 1 cut(s) 97
NdeII GATC 1 cut(s) 234
NlaIII CATG 3 cut(s) 17, 196, 391
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 3 cut(s) 17, 196, 391
PciI ACATGT 1 cut(s) 13
PfeI GAWTC 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 330
PscI ACATGT 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 5, 62, 330
PspPPI RGGWCCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 3 cut(s) 5, 62, 330
ScrFI CCNGG 1 cut(s) 97
SetI ASST 5 cut(s) 61, 106, 137, 179, 332
SinI GGWCC 2 cut(s) 5, 330
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 412
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 284
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 5, 330
XapI RAATTY 1 cut(s) 216
XceI RCATGY 3 cut(s) 17, 196, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.