Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002366

Physical Location & Seq

Genomic Coordinates Reverse (-)

14769439 .. 14771031

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCGGCCCCGGAAAGTGCTTGCTGGTGACCGGACCTCCTGGTGTGGGCAAAAGCACTTTAGTAATGAGAGTGTTTGAAACCCTAAAAGCATCATATCCAAACTTAAAAATTCAGGGTTTCTACACTAGTGAGGTTAGAGAAGGAAGTGAGAGAGTGGGGTTCCAGGTGGTCACGTTGGACGGCCGTACAGCTCCCCTCTCCTCCTCCACCATTTCCAGCCCAGCGTCTTTGAGATGGCCTACTGTGGGGAAGTACAAAGTCGATGTTGCATCGTTTGAGTCACTGGCACTGCCTGAATTGCAGGTAAGAGAAGATACTGATCTATTCATCGTTGATGAAGTTGGGAGGATGGAGTTATTCAGTTCATCGTTCTTCCCTTGTGTTTTAAGGATTCTGGAGTCCAATGTCCCTTTTTTGGCCACGGTCCCAATTCCAAAATTCGGTCGTGATATACCTGCAGTTGCAAGGTTGAAGAATCATCCGGGGGCAACAATGTTTACGCTGAGCAAAAGTAACAGGGATGCTGTTAAAGAAGAGATATACTCCCAGTTAGTAGCTTTGTTGAGTAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 map00230 map00730 map01100

Pfam Domains

Protein Families

NTPase_1

Protein Analysis

193

Amino Acids

20.98

Weight (kDa)

8.9

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005
fragaria_vesca	FvH4_1g10330 FvH4_1g10330 FvH4_1g10330 FvH4_1g10330
malus_domestica	MD15G1231300.v1.1 MD15G1231400.v1.1
prunus_persica	Prupe.7G182900_v2.0.a1 Prupe.7G182900_v2.0.a1
pyrus_communis	pycom15g20620
rosa_chinensis	RchiOBHm_Chr1g0346531 RchiOBHm_Chr2g0090391 RchiOBHm_Chr2g0097181 RchiOBHm_Chr5g0015201 RchiOBHm_Chr5g0047551 RchiOBHm_Chr7g0209931
rosa_laevigata	RLG00000016711
rosa_multiflora	Rmu_sc0001182.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144900
rosa_rugosa	Rorug02G0065400 Rorug07G0193800
rosa_samantha	Rh2AG112000 Rh2AG661300 Rh2BG114200 Rh2CG116300 Rh2DG115500 Rh2DG685800 Rh5BG224100 Rh5DG335100 Rh5DG478200 Rh7BG325800 Rh7DG175600
rosa_wichuraiana	Rw2G008720 Rw2G037870 Rw6G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	295, 466
AcoI	YGGCCR	3 cut(s)	3, 184, 420
AcsI	RAATTY	2 cut(s)	111, 440
AfaI	GTAC	2 cut(s)	190, 257
AfiI	CCNNNNNNNGG	4 cut(s)	47, 248, 418, 443
AgsI	TTSAA	2 cut(s)	80, 475
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	40, 165
AluBI	AGCT	2 cut(s)	194, 560
AluI	AGCT	2 cut(s)	194, 560
AoxI	GGCC	5 cut(s)	3, 7, 184, 239, 420
ApoI	RAATTY	2 cut(s)	111, 440
AspS9I	GGNCC	3 cut(s)	8, 35, 427
AsuC2I	CCSGG	2 cut(s)	12, 486
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	35, 427
BalI	TGGCCA	1 cut(s)	422
BccI	CCATC	2 cut(s)	231, 346
BceAI	ACGGC	2 cut(s)	171, 199
BciT130I	CCWGG	2 cut(s)	42, 167
BcnI	CCSGG	2 cut(s)	12, 486
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	2 cut(s)	295, 466
BlpI	GCTNAGC	1 cut(s)	506
Bme1390I	CCNGG	4 cut(s)	12, 42, 167, 486
Bme18I	GGWCC	2 cut(s)	35, 427
BmgT120I	GGNCC	3 cut(s)	8, 35, 427
BmiI	GGNNCC	3 cut(s)	10, 164, 429
BmrFI	CCNGG	4 cut(s)	12, 42, 167, 486
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	3 cut(s)	101, 281, 514
BmuI	ACTGGG	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuMI	CCSGG	2 cut(s)	12, 486
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	10, 423, 485
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 248, 418, 443
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	291, 550
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	42, 167
BseDI	CCNNGG	3 cut(s)	10, 423, 485
BseGI	GGATG	3 cut(s)	357, 481, 529
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	4 cut(s)	47, 248, 418, 443
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	291, 550
BseRI	GAGGAG	2 cut(s)	193, 196
BseX3I	CGGCCG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	2 cut(s)	187, 448
BshFI	GGCC	5 cut(s)	5, 9, 186, 241, 422
BsiEI	CGRYCG	2 cut(s)	187, 448
BsiSI	CCGG	4 cut(s)	6, 12, 33, 485
BslFI	GGGAC	2 cut(s)	395, 413
BslI	CCNNNNNNNGG	4 cut(s)	47, 248, 418, 443
BsmFI	GGGAC	2 cut(s)	395, 413
BsnI	GGCC	5 cut(s)	5, 9, 186, 241, 422
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	506
BspANI	GGCC	5 cut(s)	5, 9, 186, 241, 422
BspCNI	CTCAG	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	10, 164, 429
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	2 cut(s)	295, 466
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	291, 550
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	10, 423, 485
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	42, 167
Bst4CI	ACNGT	2 cut(s)	247, 427
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	7, 23
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	423
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	357, 481, 529
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMCI	CGRYCG	2 cut(s)	187, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	42, 167
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	10, 40, 165, 484
BstSFI	CTRYAG	1 cut(s)	459
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	5, 9, 186, 241, 422
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	357, 481, 529
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	284, 290
BveI	ACCTGC	2 cut(s)	295, 466
Cac8I	GCNNGC	2 cut(s)	7, 23
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	3 cut(s)	8, 35, 427
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	189, 256
CviJI	RGCY	8 cut(s)	5, 9, 186, 194, 222, 241, 422, 560
CviKI_1	RGCY	8 cut(s)	5, 9, 186, 194, 222, 241, 422, 560
CviQI	GTAC	2 cut(s)	189, 256
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	3 cut(s)	3, 184, 420
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	35, 427
Eco52I	CGGCCG	1 cut(s)	184
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	40, 165
FaiI	YATR	3 cut(s)	97, 455, 544
FaqI	GGGAC	2 cut(s)	395, 413
FokI	GGATG	3 cut(s)	364, 468, 536
FseI	GGCCGGCC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	5 cut(s)	5, 9, 186, 241, 422
HapII	CCGG	4 cut(s)	6, 12, 33, 485
HgaI	GACGC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	281, 394, 401, 478
HpaII	CCGG	4 cut(s)	6, 12, 33, 485
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	501, 572
Hpy188III	TCNNGA	2 cut(s)	398, 449
Hpy8I	GTNNAC	2 cut(s)	501, 572
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	247, 427
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	4 cut(s)	272, 304, 461, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	199
LweI	GCATC	3 cut(s)	101, 281, 514
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	4 cut(s)	28, 172, 282, 515
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	4 cut(s)	326, 367, 487, 548
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	4 cut(s)	111, 299, 432, 440
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	2 cut(s)	290, 410
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	48, 127, 209, 214, 217, 342
Mox20I	TGGCCA	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	3 cut(s)	107, 389, 531
Msp20I	TGGCCA	1 cut(s)	422
MspI	CCGG	4 cut(s)	6, 12, 33, 485
MspR9I	CCNGG	4 cut(s)	12, 42, 167, 486
MvaI	CCWGG	2 cut(s)	42, 167
MwoI	GCNNNNNNNGC	1 cut(s)	301
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	12, 486
NdeII	GATC	1 cut(s)	322
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	3 cut(s)	10, 164, 429
NmuCI	GTSAC	3 cut(s)	28, 172, 282
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	394, 478
PleI	GAGTC	2 cut(s)	289, 409
PpsI	GAGTC	2 cut(s)	289, 409
Psp6I	CCWGG	2 cut(s)	40, 165
PspEI	GGTNACC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	40, 165
PspN4I	GGNNCC	3 cut(s)	10, 164, 429
PspPI	GGNCC	3 cut(s)	8, 35, 427
PstI	CTGCAG	1 cut(s)	463
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	190, 257
RsaNI	GTAC	2 cut(s)	189, 256
SaqAI	TTAA	3 cut(s)	107, 389, 531
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	3 cut(s)	8, 35, 427
SchI	GAGTC	2 cut(s)	290, 410
ScrFI	CCNGG	4 cut(s)	12, 42, 167, 486
SetI	ASST	9 cut(s)	40, 138, 171, 179, 196, 309, 460, 473, 562
SfaNI	GCATC	3 cut(s)	101, 281, 514
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	35, 427
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	4 cut(s)	111, 299, 432, 440
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	10, 40, 165, 484
TaaI	ACNGT	2 cut(s)	247, 427
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	264
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	4 cut(s)	111, 299, 432, 440
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	394, 478
Tru1I	TTAA	3 cut(s)	107, 389, 531
Tru9I	TTAA	3 cut(s)	107, 389, 531
TscAI	CASTG	2 cut(s)	291, 297
TseFI	GTSAC	3 cut(s)	28, 172, 282
Tsp45I	GTSAC	3 cut(s)	28, 172, 282
TspDTI	ATGAA	3 cut(s)	319, 354, 357
TspRI	CASTG	2 cut(s)	291, 297
VpaK11BI	GGWCC	2 cut(s)	35, 427
XapI	RAATTY	2 cut(s)	111, 440
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.