Rmu_sc0001182.1_g000010

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001182.1
OG0002366
Physical Location & Seq
Reverse (-)
41422 .. 43255
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001182.1_g000010.1.cds

Sequence Viewer

Length: 492 bp
atggcaggtgccggaaaatgcttgctggtgactggacctccgggtgttggtaaaaccactctaatagtgaaagtctttgaaaccctgaaatcctcaaaccctaacttaaagattcagggtttctacaccagtgaggttagagaaggaggtgagagagttgggttccaggtggtcacattagacggccgtaccgctccgctcgcctcaaccaccatttccagccctgaatctttgcgatggcccactgtggggaagtacaaagtagatgttgcgtcgtttgagtccttggcagttcctgaattgcaggtacgagaagatactgacctatttgtcatcgatgaagtcggtaagatggagttgttcagttcatctttcttccctgctgtcttaagaatgctggaatccaatgttccagtcttggcgtcagttccaattccaaaagttggccgcgatatacctgcaggcatgcactcctatataaacttccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

163

Amino Acids

17.61

Weight (kDa)

6.12

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 2 cut(s) 295, 466
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 2 cut(s) 194, 199
AccII CGCG 1 cut(s) 450
AciI CCGC 3 cut(s) 192, 197, 448
AcoI YGGCCR 2 cut(s) 184, 445
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 3 cut(s) 190, 257, 309
AfiI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 3 cut(s) 184, 239, 445
AspS9I GGNCC 2 cut(s) 35, 240
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 40, 161
AvaII GGWCC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanI GGYRCC 1 cut(s) 8
BccI CCATC 2 cut(s) 231, 346
BceAI ACGGC 2 cut(s) 171, 199
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 388
BfuAI ACCTGC 2 cut(s) 295, 466
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 42, 167
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 240
BmiI GGNNCC 2 cut(s) 10, 164
BmrFI CCNGG 2 cut(s) 42, 167
BpuMI CCSGG 1 cut(s) 42
Bsa29I ATCGAT 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
Bse1I ACTGG 3 cut(s) 37, 129, 413
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BseNI ACTGG 3 cut(s) 37, 129, 413
BseX3I CGGCCG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 186, 241, 447
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 12, 41
BslI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 3 cut(s) 186, 241, 447
BspACI CCGC 3 cut(s) 192, 197, 448
BspANI GGCC 3 cut(s) 186, 241, 447
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 10, 164
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 2 cut(s) 295, 466
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 2 cut(s) 194, 199
BsrI ACTGG 3 cut(s) 37, 129, 413
BssECI CCNNGG 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 422
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 23, 201, 463, 467
BstFNI CGCG 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 40, 165
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 450
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 3 cut(s) 186, 241, 447
BsuTUI ATCGAT 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 136, 243
BveI ACCTGC 2 cut(s) 295, 466
Cac8I GCNNGC 4 cut(s) 23, 201, 463, 467
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 35, 240
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 2 cut(s) 261, 411
Csp6I GTAC 3 cut(s) 189, 256, 308
CviAII CATG 1 cut(s) 466
CviJI RGCY 4 cut(s) 186, 222, 241, 447
CviKI_1 RGCY 4 cut(s) 186, 222, 241, 447
CviQI GTAC 3 cut(s) 189, 256, 308
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 184, 445
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 469
FaiI YATR 4 cut(s) 455, 467, 477, 479
FatI CATG 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 448
HaeIII GGCC 3 cut(s) 186, 241, 447
HapII CCGG 2 cut(s) 12, 41
HgaI GACGC 2 cut(s) 261, 411
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 469
HinfI GANTC 4 cut(s) 112, 227, 281, 401
HpaII CCGG 2 cut(s) 12, 41
HphI GGTGA 2 cut(s) 40, 161
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 304, 461, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 469
LmnI GCTCC 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 28, 172
MbiI CCGCTC 2 cut(s) 194, 199
MboII GAAGA 2 cut(s) 326, 367
MluCI AATT 2 cut(s) 299, 432
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 48, 103, 127, 140, 214
MseI TTAA 2 cut(s) 107, 389
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 2 cut(s) 12, 41
MspR9I CCNGG 2 cut(s) 42, 167
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 1 cut(s) 42
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 10, 164
NmuCI GTSAC 2 cut(s) 28, 172
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 112, 227, 401
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 1 cut(s) 449
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 10, 164
PspPI GGNCC 2 cut(s) 35, 240
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 3 cut(s) 190, 257, 309
RsaNI GTAC 3 cut(s) 189, 256, 308
SaqAI TTAA 2 cut(s) 107, 389
SatI GCNGC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 35, 240
SbfI CCTGCAGG 1 cut(s) 463
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 42, 167
SdaI CCTGCAGG 1 cut(s) 463
SetI ASST 8 cut(s) 10, 40, 138, 151, 171, 309, 327, 460
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SphI GCATGC 1 cut(s) 469
Sse8387I CCTGCAGG 1 cut(s) 463
Sse9I AATT 2 cut(s) 299, 432
SsiI CCGC 3 cut(s) 192, 197, 448
StyD4I CCNGG 2 cut(s) 40, 165
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 299, 432
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 450
TfiI GAWTC 3 cut(s) 112, 227, 401
Tru1I TTAA 2 cut(s) 107, 389
Tru9I TTAA 2 cut(s) 107, 389
TscAI CASTG 2 cut(s) 136, 250
TseFI GTSAC 2 cut(s) 28, 172
Tsp45I GTSAC 2 cut(s) 28, 172
TspDTI ATGAA 2 cut(s) 354, 357
TspRI CASTG 2 cut(s) 136, 250
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 35
XceI RCATGY 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.