Rh7BG325800

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002366
Physical Location & Seq
Forward (+)
32215158 .. 32219245
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG325800.1

Sequence Viewer

Length: 474 bp
ATGATATGCTTGCTGGTGACTGGACCTCCGGATGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAAACCTAACTTAAAGATTCAGGGTTTCTACATCAGTGAGGTTAGACAAGGAGATCAATCATTCATTCATTTAGTTCTAGTTAAGGCTCAACGCATCAATATTGCTATATATTTCGGCCCTGAATCTTTGAGATGGCCCACTGTGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATCGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGTTGGAATCCAATGTTCCAATCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGCGATATACCAGCAGAGGGGGGAAAGGCATTAAAAGGCGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

157

Amino Acids

17.23

Weight (kDa)

6.6

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 4 - 139 2.4e-30 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 422
AccII CGCG 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 5 cut(s) 35, 227, 228, 422, 443
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 3 cut(s) 199, 218, 424
AspS9I GGNCC 3 cut(s) 23, 200, 219
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 23
BccI CCATC 2 cut(s) 210, 325
BfaI CTAG 2 cut(s) 161, 472
BfrI CTTAAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 23, 200, 219
BmsI GCATC 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 227, 228, 422, 443
Bse1I ACTGG 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 5 cut(s) 35, 227, 228, 422, 443
BseNI ACTGG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 201, 220, 426
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 35, 227, 228, 422, 443
BsnI GGCC 3 cut(s) 201, 220, 426
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 427
BspANI GGCC 3 cut(s) 201, 220, 426
BspDI ATCGAT 1 cut(s) 315
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 274
BspTI CTTAAG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 429
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstUI CGCG 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 3 cut(s) 201, 220, 426
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 124, 222
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 23, 200, 219
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 2 cut(s) 240, 390
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 4 cut(s) 170, 201, 220, 426
CviKI_1 RGCY 4 cut(s) 170, 201, 220, 426
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaiI YATR 4 cut(s) 7, 191, 193, 434
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 2 cut(s) 161, 472
GluI GCNGC 1 cut(s) 427
HaeIII GGCC 3 cut(s) 201, 220, 426
HapII CCGG 1 cut(s) 29
HgaI GACGC 2 cut(s) 240, 390
Hin1I GRCGYC 1 cut(s) 401
HinfI GANTC 5 cut(s) 100, 206, 260, 380, 467
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 29, 275
Hpy99I CGWCG 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 401
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 6, 42, 86, 89, 216, 269, 288, 372, 450
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 161, 472
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 305, 346
MluCI AATT 2 cut(s) 278, 411
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 4 cut(s) 36, 91, 115, 436
MroI TCCGGA 1 cut(s) 28
MseI TTAA 4 cut(s) 95, 165, 368, 458
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 429
NdeII GATC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 16
PfeI GAWTC 4 cut(s) 100, 206, 380, 467
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 23, 200, 219
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 4 cut(s) 95, 165, 368, 458
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 3 cut(s) 23, 200, 219
SchI GAGTC 1 cut(s) 269
SetI ASST 5 cut(s) 28, 91, 126, 288, 306
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 278, 411
SsiI CCGC 1 cut(s) 427
SspI AATATT 1 cut(s) 184
SspMI CTAG 2 cut(s) 161, 472
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 278, 411
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 4 cut(s) 100, 206, 380, 467
Tru1I TTAA 4 cut(s) 95, 165, 368, 458
Tru9I TTAA 4 cut(s) 95, 165, 368, 458
TscAI CASTG 2 cut(s) 124, 229
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 4 cut(s) 136, 140, 333, 336
TspRI CASTG 2 cut(s) 124, 229
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 23
XspI CTAG 2 cut(s) 161, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.