Rh2DG685800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002366
Physical Location & Seq
Reverse (-)
90427627 .. 90429767
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG685800.1

Sequence Viewer

Length: 309 bp
ATGAATGTCGAGGCTGGTTCTGGTGGCAATGCTTCATCTTCTGAGCTCATGGATCATGGTCGTTGCCAACACGGTGGTGGTAAGCAAAGTATGAAGCGCGACGGTGATGGTGGGAGGAGAAATGATCACAGCAGCAGTTTAATTCAGTTTCAACTCCTCTCTAGGACGCCAGGGTTTCATGCCTTCACCCACGTTCAGAAGCAGTTTGGCTTAGGTAGTCGCTTGCGTACAAAAAGGCCGCTGATGAGAGAAAAAGAACCTAGCTTCAATGAAGTTTTAAGTGGTCTAAAAGCGTTCATAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.26

Weight (kDa)

10.55

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 2 cut(s) 152, 268
AjnI CCWGG 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 2 cut(s) 46, 264
AluI AGCT 2 cut(s) 46, 264
Alw21I GWGCWC 1 cut(s) 48
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 116, 178
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 124
BfaI CTAG 2 cut(s) 162, 261
BisI GCNGC 2 cut(s) 133, 239
BlsI GCNGC 2 cut(s) 134, 240
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 130, 146
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 48
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 52, 124
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 99
BspPI GGATC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 52, 124
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 74, 104
BstACI GRCGYC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 42, 211
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 55, 127
BstMBI GATC 2 cut(s) 52, 124
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 74
BsuRI GGCC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 49, 56, 179
CviJI RGCY 5 cut(s) 14, 46, 210, 238, 264
CviKI_1 RGCY 5 cut(s) 14, 46, 210, 238, 264
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 42, 211
DpnI GATC 2 cut(s) 54, 126
DpnII GATC 2 cut(s) 52, 124
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 3 cut(s) 52, 59, 182
FaiI YATR 5 cut(s) 50, 57, 92, 180, 299
FatI CATG 3 cut(s) 48, 55, 178
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 133, 239
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 133, 239
FspBI CTAG 2 cut(s) 162, 261
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 133, 239
HaeIII GGCC 1 cut(s) 238
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 3 cut(s) 52, 59, 182
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HphI GGTGA 2 cut(s) 116, 178
Hpy188I TCNGA 2 cut(s) 43, 198
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 74, 104
HpyCH4IV ACGT 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 42, 211
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 52, 59, 182
HspAI GCGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 52, 124
LpnPI CCDG 3 cut(s) 6, 156, 183
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 2 cut(s) 162, 261
MaeII ACGT 1 cut(s) 192
MalI GATC 2 cut(s) 54, 126
MboI GATC 2 cut(s) 52, 124
MboII GAAGA 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 141
MnlI CCTC 3 cut(s) 4, 108, 167
MseI TTAA 2 cut(s) 140, 278
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 241
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 99
NdeII GATC 2 cut(s) 52, 124
NlaIII CATG 3 cut(s) 52, 59, 182
OliI CACNNNNGTG 1 cut(s) 75
PkrI GCNGC 2 cut(s) 134, 240
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 140, 278
SatI GCNGC 2 cut(s) 133, 239
Sau3AI GATC 2 cut(s) 52, 124
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 48
SetI ASST 5 cut(s) 48, 195, 217, 262, 266
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 239
SspMI CTAG 2 cut(s) 162, 261
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 74, 104
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 140, 278
Tru9I TTAA 2 cut(s) 140, 278
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 6 cut(s) 17, 24, 107, 167, 285, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XspI CTAG 2 cut(s) 162, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.