Rw6G004020

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002366
Physical Location & Seq
Forward (+)
6565522 .. 6567221
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004020.1

Sequence Viewer

Length: 525 bp
ATGTTTTCCGTCGCGAAAAGTCAGCTTTTGCGACGGCATGTGCTACGGCTATTTTACCGTTGCATGTTAAAGAGTTTTTGTGACGGACATAACATTACCGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCATAACTTAAAGATTCAGGGTTTCTACACCAGAGGTGAGAGAGTTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTTATGGCCCACTGTGGGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATTGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTAGAATCCAATGTTCCAGTCTTGGCGTCAGTTCCAATTCCAAAAATCAGCTTGAGGTTGTCATGTTACCATCCTGCATGCCTTTTGTTTTGGTTATGGCTTACAGTTGAGGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

8.85

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 33 - 150 1.3e-27 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 236
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 234, 239
AcoI YGGCCR 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 2 cut(s) 232, 266
AfiI CCNNNNNNNGG 2 cut(s) 255, 256
AflII CTTAAG 1 cut(s) 397
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 25, 456
AluI AGCT 2 cut(s) 25, 456
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 226, 246
AsiGI ACCGGT 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BccI CCATC 2 cut(s) 355, 483
BceAI ACGGC 4 cut(s) 50, 62, 213, 241
BciT130I CCWGG 1 cut(s) 209
BfaI CTAG 1 cut(s) 407
BfrI CTTAAG 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 478
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 256
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 2 cut(s) 255, 256
BseNI ACTGG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 228, 248
BshTI ACCGGT 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 255, 256
BsnI GGCC 2 cut(s) 228, 248
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 2 cut(s) 234, 239
BspANI GGCC 2 cut(s) 228, 248
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 59, 254, 511
BstACI GRCGYC 1 cut(s) 431
BstAFI CTTAAG 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 484
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 229
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 3 cut(s) 41, 67, 486
BstSCI CCNGG 1 cut(s) 207
BstUI CGCG 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 228, 248
BtsCI GGATG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 250
BtuMI TCGCGA 1 cut(s) 14
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 484
CaiI CAGNNNCTG 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 270, 420
Csp6I GTAC 2 cut(s) 231, 265
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 4 cut(s) 38, 64, 468, 483
CviJI RGCY 6 cut(s) 25, 49, 228, 248, 456, 505
CviKI_1 RGCY 6 cut(s) 25, 49, 228, 248, 456, 505
CviQI GTAC 2 cut(s) 231, 265
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 226
EagI CGGCCG 1 cut(s) 226
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 294
Eco52I CGGCCG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 41, 67, 471, 486
FatI CATG 4 cut(s) 37, 63, 467, 482
FokI GGATG 1 cut(s) 462
FspBI CTAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 228, 248
HapII CCGG 1 cut(s) 99
HgaI GACGC 2 cut(s) 270, 420
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 4 cut(s) 41, 67, 471, 486
HinfI GANTC 3 cut(s) 169, 290, 410
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 203
Hpy188III TCNNGA 2 cut(s) 13, 305
Hpy99I CGWCG 3 cut(s) 14, 36, 286
HpyCH4III ACNGT 3 cut(s) 59, 254, 511
HpyCH4V TGCA 3 cut(s) 63, 313, 482
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 4 cut(s) 41, 67, 471, 486
LmnI GCTCC 1 cut(s) 241
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 3 cut(s) 80, 214, 470
MbiI CCGCTC 1 cut(s) 236
MboII GAAGA 2 cut(s) 335, 376
MluCI AATT 2 cut(s) 308, 441
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 4 cut(s) 160, 182, 453, 508
MseI TTAA 3 cut(s) 68, 164, 398
MspCI CTTAAG 1 cut(s) 397
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 14
NlaIII CATG 4 cut(s) 41, 67, 471, 486
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 80, 214
NruI TCGCGA 1 cut(s) 14
NspI RCATGY 3 cut(s) 41, 67, 486
PaeI GCATGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 169, 410
PinAI ACCGGT 1 cut(s) 98
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 305
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 2 cut(s) 232, 266
RsaNI GTAC 2 cut(s) 231, 265
SaqAI TTAA 3 cut(s) 68, 164, 398
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 209
SetI ASST 7 cut(s) 27, 193, 213, 318, 336, 458, 464
SmlI CTYRAG 2 cut(s) 397, 457
SmoI CTYRAG 2 cut(s) 397, 457
SphI GCATGC 1 cut(s) 486
Sse9I AATT 2 cut(s) 308, 441
SsiI CCGC 2 cut(s) 234, 239
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 59, 254, 511
TasI AATT 2 cut(s) 308, 441
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 169, 410
Tru1I TTAA 3 cut(s) 68, 164, 398
Tru9I TTAA 3 cut(s) 68, 164, 398
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 2 cut(s) 80, 214
Tsp45I GTSAC 2 cut(s) 80, 214
TspDTI ATGAA 2 cut(s) 363, 366
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 257
Vha464I CTTAAG 1 cut(s) 397
XceI RCATGY 3 cut(s) 41, 67, 486
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.