Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002366

Physical Location & Seq

Genomic Coordinates Reverse (-)

87698781 .. 87701218

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG661300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAATGTTGAGGCTGGTTCTGGTGGCAATGCTTTATCTTTTGAGCCCATGGATCATGGTCATTGCCAGCACGGTGGTGGTAAGCGGAGCATGGAGCGCAACGGTGACAGTGGGAGGAGAAATGATCACAGCAGCAGTTTAATTCAGTTTCAACTCCTCTCTAGGACACCAGGGTTTCATGCCTTCACCCACGTTCAGAAGCAGTTCGGCTTAGGTAGTCGCTTGCGTACAAAAAGGCCGCTCATGATGAGAGAAAAAGAACCTAGGGTTCATGGGCTAAAACGTGCGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

11.16

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005
fragaria_vesca	FvH4_1g10330 FvH4_1g10330 FvH4_1g10330 FvH4_1g10330
malus_domestica	MD15G1231300.v1.1 MD15G1231400.v1.1
prunus_persica	Prupe.7G182900_v2.0.a1 Prupe.7G182900_v2.0.a1
pyrus_communis	pycom15g20620
rosa_chinensis	RchiOBHm_Chr1g0346531 RchiOBHm_Chr2g0090391 RchiOBHm_Chr2g0097181 RchiOBHm_Chr5g0015201 RchiOBHm_Chr5g0047551 RchiOBHm_Chr7g0209931
rosa_laevigata	RLG00000016711
rosa_multiflora	Rmu_sc0001182.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144900
rosa_rugosa	Rorug02G0065400 Rorug07G0193800
rosa_samantha	Rh2AG112000 Rh2AG661300 Rh2BG114200 Rh2CG116300 Rh2DG115500 Rh2DG685800 Rh5BG224100 Rh5DG335100 Rh5DG478200 Rh7BG325800 Rh7DG175600
rosa_wichuraiana	Rw2G008720 Rw2G037870 Rw6G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	241
AciI	CCGC	2 cut(s)	85, 239
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	75
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	203
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	116, 178
AvrII	CCTAGG	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	2 cut(s)	162, 264
BisI	GCNGC	2 cut(s)	133, 239
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	2 cut(s)	134, 240
Bme1390I	CCNGG	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	48, 170, 263
Bse3DI	GCAATG	2 cut(s)	34, 61
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	48, 170, 263
BseMI	GCAATG	2 cut(s)	34, 61
BseRI	GAGGAG	2 cut(s)	130, 146
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	52, 124
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	2 cut(s)	85, 239
BspANI	GGCC	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	34, 61
BssECI	CCNNGG	3 cut(s)	48, 170, 263
BssMI	GATC	2 cut(s)	52, 124
BssT1I	CCWWGG	2 cut(s)	48, 263
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	74, 104, 110
BstC8I	GCNNGC	2 cut(s)	68, 224
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	55, 127
BstMBI	GATC	2 cut(s)	52, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	68, 224
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	6 cut(s)	49, 56, 91, 179, 244, 272
CviJI	RGCY	5 cut(s)	14, 46, 210, 238, 277
CviKI_1	RGCY	5 cut(s)	14, 46, 210, 238, 277
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	2 cut(s)	54, 126
DpnII	GATC	2 cut(s)	52, 124
Eco130I	CCWWGG	2 cut(s)	48, 263
Eco24I	GRGCYC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	48, 263
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	2 cut(s)	48, 263
FaeI	CATG	6 cut(s)	52, 59, 94, 182, 247, 275
FaiI	YATR	6 cut(s)	50, 57, 92, 180, 245, 273
FatI	CATG	6 cut(s)	48, 55, 90, 178, 243, 271
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	133, 239
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	133, 239
FspBI	CTAG	2 cut(s)	162, 264
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	133, 239
HaeIII	GGCC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	52, 59, 94, 182, 247, 275
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HphI	GGTGA	2 cut(s)	116, 178
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	74, 104, 110
HpyCH4IV	ACGT	2 cut(s)	192, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	2 cut(s)	192, 283
Hsp92II	CATG	6 cut(s)	52, 59, 94, 182, 247, 275
HspAI	GCGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	52, 124
LmnI	GCTCC	2 cut(s)	87, 94
LpnPI	CCDG	4 cut(s)	6, 80, 156, 183
Lsp1109I	GCAGC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	162, 264
MaeII	ACGT	2 cut(s)	192, 283
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	54, 126
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	2 cut(s)	52, 124
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	141, 291
MnlI	CCTC	3 cut(s)	4, 108, 167
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	140, 295
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	52, 124
NlaIII	CATG	6 cut(s)	52, 59, 94, 182, 247, 275
NmuCI	GTSAC	1 cut(s)	104
OliI	CACNNNNGTG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	134, 240
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	140, 295
SatI	GCNGC	2 cut(s)	133, 239
Sau3AI	GATC	2 cut(s)	52, 124
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	195, 217, 265, 286
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	141, 291
SsiI	CCGC	2 cut(s)	85, 239
SspMI	CTAG	2 cut(s)	162, 264
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	48, 263
TaaI	ACNGT	3 cut(s)	74, 104, 110
TaiI	ACGT	2 cut(s)	195, 286
TasI	AATT	2 cut(s)	141, 291
TauI	GCSGC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	140, 295
Tru9I	TTAA	2 cut(s)	140, 295
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	132
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	17, 167, 260
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	162, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.