RchiOBHm_Chr2g0090391

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002366
Physical Location & Seq
Forward (+)
4225321 .. 4226115
795 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46564

Sequence Viewer

Length: 450 bp
ATGATTCTAAATCTAATGCAGGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAGGGTTTCTACACCAGTGAGGTTAGACAAGGAGGTGAGAGAGTTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTTGCCTCATCCATCATTTCTATCCCTGAATCTTTGAGATGGCCCAATGTGGGGAAGTACAAAGTAGATGTTGCGTCATTTGAGTCCTTGGCAATTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTATCATCGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTACTGTCTTAAGAGTGCTGGAATCCAATGTTCCAGTTTTGGCGTCAGTTCCAATTCCAAAAGTTGGCTGCGATATACTAGCAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

149

Amino Acids

16.23

Weight (kDa)

5.18

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 6 - 138 2.2e-36 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 274, 431
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 2 cut(s) 171, 176
AcoI YGGCCR 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 3 cut(s) 169, 236, 445
AfiI CCNNNNNNNGG 3 cut(s) 227, 228, 422
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 144
AoxI GGCC 2 cut(s) 163, 218
ApeKI GCWGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BbvI GCAGC 1 cut(s) 413
BccI CCATC 3 cut(s) 197, 210, 325
BceAI ACGGC 2 cut(s) 150, 178
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 437
BfrI CTTAAG 1 cut(s) 367
BfuAI ACCTGC 2 cut(s) 274, 431
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 228, 422
Bse1I ACTGG 2 cut(s) 108, 392
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 227, 228, 422
BseNI ACTGG 2 cut(s) 108, 392
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 165, 220
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 227, 228, 422
BsnI GGCC 2 cut(s) 165, 220
BspACI CCGC 2 cut(s) 171, 176
BspANI GGCC 2 cut(s) 165, 220
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 143
BspMI ACCTGC 2 cut(s) 274, 431
BspTI CTTAAG 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 108, 392
BssECI CCNNGG 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 401
BstAFI CTTAAG 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 185
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 413
BstZI CGGCCG 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 165, 220
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 2 cut(s) 274, 431
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 219
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 2 cut(s) 240, 390
Csp6I GTAC 3 cut(s) 168, 235, 444
CviJI RGCY 3 cut(s) 165, 220, 426
CviKI_1 RGCY 3 cut(s) 165, 220, 426
CviQI GTAC 3 cut(s) 168, 235, 444
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 264
Eco52I CGGCCG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaiI YATR 2 cut(s) 434, 448
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 1 cut(s) 437
GluI GCNGC 1 cut(s) 427
HaeIII GGCC 2 cut(s) 165, 220
HgaI GACGC 2 cut(s) 240, 390
Hin1I GRCGYC 1 cut(s) 401
HinfI GANTC 5 cut(s) 4, 91, 206, 260, 380
HphI GGTGA 1 cut(s) 140
Hpy188III TCNNGA 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 19, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
Hsp92I GRCGYC 1 cut(s) 401
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 413
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 151
MbiI CCGCTC 1 cut(s) 173
MboII GAAGA 2 cut(s) 305, 346
MluCI AATT 3 cut(s) 270, 278, 411
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 4 cut(s) 82, 106, 119, 193
MseI TTAA 2 cut(s) 86, 368
MspCI CTTAAG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 151
PfeI GAWTC 4 cut(s) 4, 91, 206, 380
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 3 cut(s) 169, 236, 445
RsaNI GTAC 3 cut(s) 168, 235, 444
SaqAI TTAA 2 cut(s) 86, 368
SatI GCNGC 1 cut(s) 427
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 146
SetI ASST 6 cut(s) 117, 130, 150, 288, 306, 445
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 3 cut(s) 270, 278, 411
SsiI CCGC 2 cut(s) 171, 176
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 315
TasI AATT 3 cut(s) 270, 278, 411
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 4 cut(s) 4, 91, 206, 380
Tru1I TTAA 2 cut(s) 86, 368
Tru9I TTAA 2 cut(s) 86, 368
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 333, 336
TspRI CASTG 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 367
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.