Rroxscaffold_2G00144900

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002366
Physical Location & Seq
Forward (+)
82796663 .. 82798135
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144900.1

Sequence Viewer

Length: 579 bp
ATGGCAGGTGCCGGAAAATGCTTGCTGGTGACTGGACCTCCGGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAGGGTTTCTACACCAGTGAGGTTAGACAAGGAGGTGAGAGAGTTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTCGCCTCATCCACCATTTCCAGCCCTGAATCTTTGAGATGGCCCACTGTGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATCGATGAAGTCGGTAAGATGGAGTTGTTCAGTTCATGTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATGTTCCGGTCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGTGATATACCCGCAGTTGCAAGGTTAAAGAATCATCCGGGTGCAACAATTTTTACACTGAGCCAAAGTAACCGAGATGCCACTAAAGAACTGATATACTCCCAATTGGTAGACTTACTGATAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

192

Amino Acids

20.76

Weight (kDa)

8.55

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 8 - 181 3.1e-47 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 2 cut(s) 194, 199
AccI GTMKAC 1 cut(s) 558
AciI CCGC 3 cut(s) 192, 197, 459
AcoI YGGCCR 2 cut(s) 184, 445
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 2 cut(s) 190, 257
AfiI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 3 cut(s) 184, 239, 445
AspS9I GGNCC 2 cut(s) 35, 240
AsuC2I CCSGG 2 cut(s) 42, 486
AsuHPI GGTGA 2 cut(s) 40, 161
AvaII GGWCC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanI GGYRCC 1 cut(s) 8
BccI CCATC 2 cut(s) 231, 346
BceAI ACGGC 3 cut(s) 171, 199, 432
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 2 cut(s) 42, 486
BfrI CTTAAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 295
Bme1390I CCNGG 3 cut(s) 42, 167, 486
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 240
BmiI GGNNCC 2 cut(s) 10, 164
BmrFI CCNGG 3 cut(s) 42, 167, 486
BmsI GCATC 1 cut(s) 514
BpuMI CCSGG 2 cut(s) 42, 486
Bsa29I ATCGAT 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
Bse1I ACTGG 2 cut(s) 37, 129
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 206, 481
BseLI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 37, 129
BseX3I CGGCCG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 186, 241, 447
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 12, 41, 413, 485
BslI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BsnI GGCC 3 cut(s) 186, 241, 447
BspACI CCGC 3 cut(s) 192, 197, 459
BspANI GGCC 3 cut(s) 186, 241, 447
BspCNI CTCAG 1 cut(s) 498
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 10, 164
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 2 cut(s) 194, 199
BsrI ACTGG 2 cut(s) 37, 129
BssECI CCNNGG 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 422
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 23, 201
BstDEI CTNAG 1 cut(s) 506
BstF5I GGATG 2 cut(s) 206, 481
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 40, 165, 484
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 3 cut(s) 186, 241, 447
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 2 cut(s) 206, 481
BtsIMutI CAGTG 3 cut(s) 136, 243, 503
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 23, 201
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 35, 240
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 2 cut(s) 261, 411
Csp6I GTAC 2 cut(s) 189, 256
CviAII CATG 1 cut(s) 369
CviJI RGCY 5 cut(s) 186, 222, 241, 447, 510
CviKI_1 RGCY 5 cut(s) 186, 222, 241, 447, 510
CviQI GTAC 2 cut(s) 189, 256
DdeI CTNAG 1 cut(s) 506
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 184, 445
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 372
FaiI YATR 3 cut(s) 370, 455, 544
FatI CATG 1 cut(s) 368
FauI CCCGC 1 cut(s) 466
FblI GTMKAC 1 cut(s) 558
FokI GGATG 2 cut(s) 193, 468
HaeIII GGCC 3 cut(s) 186, 241, 447
HapII CCGG 4 cut(s) 12, 41, 413, 485
HgaI GACGC 2 cut(s) 261, 411
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 372
HinfI GANTC 5 cut(s) 112, 227, 281, 401, 478
HpaII CCGG 4 cut(s) 12, 41, 413, 485
HphI GGTGA 2 cut(s) 40, 161
Hpy166II GTNNAC 1 cut(s) 559
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 304, 467, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 199
LweI GCATC 1 cut(s) 514
MaeIII GTNAC 3 cut(s) 28, 172, 515
MbiI CCGCTC 2 cut(s) 194, 199
MboII GAAGA 2 cut(s) 326, 367
MfeI CAATTG 1 cut(s) 551
MluCI AATT 4 cut(s) 299, 432, 495, 551
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 48, 103, 127, 140, 214
MseI TTAA 3 cut(s) 107, 389, 473
MslI CAYNNNNRTG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 4 cut(s) 12, 41, 413, 485
MspR9I CCNGG 3 cut(s) 42, 167, 486
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 2 cut(s) 42, 486
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 10, 164
NmuCI GTSAC 2 cut(s) 28, 172
PfeI GAWTC 4 cut(s) 112, 227, 401, 478
PflMI CCANNNNNTGG 1 cut(s) 443
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 10, 164
PspPI GGNCC 2 cut(s) 35, 240
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 190, 257
RsaNI GTAC 2 cut(s) 189, 256
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 107, 389, 473
Sau96I GGNCC 2 cut(s) 35, 240
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 3 cut(s) 42, 167, 486
SetI ASST 8 cut(s) 10, 40, 138, 151, 171, 309, 327, 473
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 4 cut(s) 299, 432, 495, 551
SsiI CCGC 3 cut(s) 192, 197, 459
StyD4I CCNGG 3 cut(s) 40, 165, 484
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 299, 432, 495, 551
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 4 cut(s) 112, 227, 401, 478
Tru1I TTAA 3 cut(s) 107, 389, 473
Tru9I TTAA 3 cut(s) 107, 389, 473
TscAI CASTG 3 cut(s) 136, 250, 510
TseFI GTSAC 2 cut(s) 28, 172
Tsp45I GTSAC 2 cut(s) 28, 172
TspDTI ATGAA 2 cut(s) 354, 357
TspRI CASTG 3 cut(s) 136, 250, 510
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.