Rh7DG175600

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002366
Physical Location & Seq
Reverse (-)
16077602 .. 16078551
950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG175600.1

Sequence Viewer

Length: 405 bp
ATGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAGGGTTTCTACACCAGTGAGGTTAGGCAAGGAGGTGAGAGAATTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTTGCCTCATCCATCATTTCCAGCCCTGAATCTTTGAGATGGTCCAATGTGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAATTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTATCATCGATGAAGTCGGTAAGATGGAGTTGTTCGGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATGTTCTAGTTTTGGCGTCAGTTCCAATTCCAAAAGTTGGCTGCGATATACTAGCAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

134

Amino Acids

14.61

Weight (kDa)

4.97

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 2 - 123 2.5e-29 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 229, 386
AccB7I CCANNNNNTGG 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 128
AciI CCGC 2 cut(s) 126, 131
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 3 cut(s) 124, 191, 400
AfiI CCNNNNNNNGG 2 cut(s) 183, 377
AflII CTTAAG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 99
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BbvI GCAGC 1 cut(s) 368
BccI CCATC 3 cut(s) 152, 165, 280
BceAI ACGGC 2 cut(s) 105, 133
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 2 cut(s) 347, 392
BfrI CTTAAG 1 cut(s) 322
BfuAI ACCTGC 2 cut(s) 229, 386
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 377
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 183, 377
BseNI ACTGG 1 cut(s) 63
BseX3I CGGCCG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 368
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 120
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 183, 377
BsnI GGCC 1 cut(s) 120
BspACI CCGC 2 cut(s) 126, 131
BspANI GGCC 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 2 cut(s) 229, 386
BspTI CTTAAG 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 356
BstAFI CTTAAG 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 140
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 368
BstZI CGGCCG 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 2 cut(s) 229, 386
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 2 cut(s) 195, 345
Csp6I GTAC 3 cut(s) 123, 190, 399
CviJI RGCY 3 cut(s) 120, 156, 381
CviKI_1 RGCY 3 cut(s) 120, 156, 381
CviQI GTAC 3 cut(s) 123, 190, 399
EaeI YGGCCR 1 cut(s) 118
EagI CGGCCG 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 174
Eco52I CGGCCG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 2 cut(s) 389, 403
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 382
FspBI CTAG 2 cut(s) 347, 392
GluI GCNGC 1 cut(s) 382
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 2 cut(s) 195, 345
Hin1I GRCGYC 1 cut(s) 356
HinfI GANTC 4 cut(s) 46, 161, 215, 335
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 230
Hpy99I CGWCG 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 1 cut(s) 368
MaeI CTAG 2 cut(s) 347, 392
MaeIII GTNAC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 128
MboII GAAGA 2 cut(s) 260, 301
MluCI AATT 4 cut(s) 90, 225, 233, 366
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 4 cut(s) 37, 61, 74, 148
MseI TTAA 2 cut(s) 41, 323
MspCI CTTAAG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 3 cut(s) 46, 161, 335
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 3 cut(s) 124, 191, 400
RsaNI GTAC 3 cut(s) 123, 190, 399
SaqAI TTAA 2 cut(s) 41, 323
SatI GCNGC 1 cut(s) 382
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 101
SetI ASST 6 cut(s) 72, 85, 105, 243, 261, 400
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 4 cut(s) 90, 225, 233, 366
SsiI CCGC 2 cut(s) 126, 131
SspMI CTAG 2 cut(s) 347, 392
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 1 cut(s) 270
TasI AATT 4 cut(s) 90, 225, 233, 366
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 46, 161, 335
Tru1I TTAA 2 cut(s) 41, 323
Tru9I TTAA 2 cut(s) 41, 323
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 17, 288, 291
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 174
XspI CTAG 2 cut(s) 347, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.