Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002366

Physical Location & Seq

Genomic Coordinates Forward (+)

26028022 .. 26032059

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAATGTCGAGGCTGGTTCTAGTGGCAATGCTTTGTCTTCTGAGCTCATGGATCATGGTCATTGCCGGCACGGTGGTGGTAAGCGGAGCATGGAGCGCGACGGTGACGGTGGGAAGAGAAATGGGTTTAGGGAGAGAGAGGTGAGAGAGACCGGGAGAGATGTCTTCTGGTTCTTTAACGAGAGGAAGAGGTCTTCTGCGAGATTACAGAAAGAAGAAAAAGGATGTGAGAGCTCTTCTGCGAGAGACATCCACAGAAAGAAGAAGAGAGAAATTCACATCGCGAGACTGATCGGACAGAGGAGGAGAAGAGGGGGACGAGAAGAAGAGGAATCTGGATTGCCCGACATAGAGAGAAAGAGAAGTGCGCCGATTAGGTCCTCCACAAGCGGAAGGAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.32

Weight (kDa)

10.59

Isoelectric Point (pI)

88.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005 AT5G66005
fragaria_vesca	FvH4_1g10330 FvH4_1g10330 FvH4_1g10330 FvH4_1g10330
malus_domestica	MD15G1231300.v1.1 MD15G1231400.v1.1
prunus_persica	Prupe.7G182900_v2.0.a1 Prupe.7G182900_v2.0.a1
pyrus_communis	pycom15g20620
rosa_chinensis	RchiOBHm_Chr1g0346531 RchiOBHm_Chr2g0090391 RchiOBHm_Chr2g0097181 RchiOBHm_Chr5g0015201 RchiOBHm_Chr5g0047551 RchiOBHm_Chr7g0209931
rosa_laevigata	RLG00000016711
rosa_multiflora	Rmu_sc0001182.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144900
rosa_rugosa	Rorug02G0065400 Rorug07G0193800
rosa_samantha	Rh2AG112000 Rh2AG661300 Rh2BG114200 Rh2CG116300 Rh2DG115500 Rh2DG685800 Rh5BG224100 Rh5DG335100 Rh5DG478200 Rh7BG325800 Rh7DG175600
rosa_wichuraiana	Rw2G008720 Rw2G037870 Rw6G004020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	99, 284
AciI	CCGC	2 cut(s)	85, 390
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	273
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	46, 234
AluI	AGCT	2 cut(s)	46, 234
Alw21I	GWGCWC	2 cut(s)	48, 236
Alw26I	GTCTC	3 cut(s)	143, 240, 280
AlwI	GGATC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	99, 370
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	116, 154
AvaII	GGWCC	1 cut(s)	378
BanII	GRGCYC	2 cut(s)	48, 236
BbsI	GAAGAC	3 cut(s)	30, 157, 186
Bbv12I	GWGCWC	2 cut(s)	48, 236
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	3 cut(s)	143, 240, 280
BfaI	CTAG	2 cut(s)	21, 403
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	154
BpiI	GAAGAC	3 cut(s)	30, 157, 186
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	34, 61
BseGI	GGATG	2 cut(s)	230, 249
BseMI	GCAATG	2 cut(s)	34, 61
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	316, 319
Bsh1236I	CGCG	2 cut(s)	99, 284
BsiHKAI	GWGCWC	2 cut(s)	48, 236
BsiSI	CCGG	2 cut(s)	67, 153
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	143, 240, 280
BsmFI	GGGAC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	48, 236
Bsp143I	GATC	2 cut(s)	52, 291
Bsp68I	TCGCGA	1 cut(s)	284
BspACI	CCGC	2 cut(s)	85, 390
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	99, 284
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	34, 61
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	2 cut(s)	52, 291
Bst4CI	ACNGT	3 cut(s)	74, 104, 110
Bst6I	CTCTTC	6 cut(s)	110, 182, 241, 260, 304, 321
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	230, 249
BstFNI	CGCG	2 cut(s)	99, 284
BstHHI	GCGC	2 cut(s)	99, 370
BstKTI	GATC	2 cut(s)	55, 294
BstMAI	GTCTC	3 cut(s)	143, 240, 280
BstMBI	GATC	2 cut(s)	52, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	152
BstUI	CGCG	2 cut(s)	99, 284
BstV2I	GAAGAC	3 cut(s)	30, 157, 186
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	230, 249
BtuMI	TCGCGA	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	68
CfoI	GCGC	2 cut(s)	99, 370
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	378
CviAII	CATG	3 cut(s)	49, 56, 91
CviJI	RGCY	3 cut(s)	14, 46, 234
CviKI_1	RGCY	3 cut(s)	14, 46, 234
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	54, 293
DpnII	GATC	2 cut(s)	52, 291
Eam1104I	CTCTTC	6 cut(s)	110, 182, 241, 260, 304, 321
EarI	CTCTTC	6 cut(s)	110, 182, 241, 260, 304, 321
Ecl136II	GAGCTC	2 cut(s)	46, 234
Eco24I	GRGCYC	2 cut(s)	48, 236
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	2 cut(s)	46, 234
EcoICRI	GAGCTC	2 cut(s)	46, 234
EcoO109I	RGGNCCY	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	48, 236
FaeI	CATG	3 cut(s)	52, 59, 94
FaiI	YATR	4 cut(s)	50, 57, 92, 350
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	48, 55, 90
FokI	GGATG	2 cut(s)	236, 237
FriOI	GRGCYC	2 cut(s)	48, 236
FspBI	CTAG	2 cut(s)	21, 403
GlaI	GCGC	2 cut(s)	98, 369
HapII	CCGG	2 cut(s)	67, 153
HhaI	GCGC	2 cut(s)	99, 370
Hin1II	CATG	3 cut(s)	52, 59, 94
Hin6I	GCGC	2 cut(s)	97, 368
HinP1I	GCGC	2 cut(s)	97, 368
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	67, 153
HphI	GGTGA	2 cut(s)	116, 154
Hpy188I	TCNGA	2 cut(s)	43, 296
Hpy188III	TCNNGA	2 cut(s)	283, 336
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	3 cut(s)	74, 104, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	52, 59, 94
HspAI	GCGC	2 cut(s)	97, 368
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	52, 291
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	87, 94
LpnPI	CCDG	4 cut(s)	80, 154, 166, 321
MaeI	CTAG	2 cut(s)	21, 403
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	54, 293
MboI	GATC	2 cut(s)	52, 291
MhlI	GDGCHC	2 cut(s)	48, 236
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	9 cut(s)	4, 133, 177, 183, 294, 297, 305, 322, 391
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	2 cut(s)	67, 153
MspR9I	CCNGG	1 cut(s)	154
MvnI	CGCG	2 cut(s)	99, 284
MwoI	GCNNNNNNNGC	1 cut(s)	96
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	2 cut(s)	52, 291
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	3 cut(s)	52, 59, 94
NmuCI	GTSAC	1 cut(s)	104
NruI	TCGCGA	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	378
Psp124BI	GAGCTC	2 cut(s)	48, 236
Psp5II	RGGWCCY	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	378
PspPPI	RGGWCCY	1 cut(s)	378
RruI	TCGCGA	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	2 cut(s)	48, 236
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	52, 291
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	48, 236
SetI	ASST	5 cut(s)	48, 144, 194, 236, 380
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	2 cut(s)	85, 390
SspMI	CTAG	2 cut(s)	21, 403
SstI	GAGCTC	2 cut(s)	48, 236
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	74, 104, 110
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	2 cut(s)	21, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.