Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

7035550 .. 7036345

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12752.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTATGCATCAATAATGACTCCATTCCATCACTTTACTAATTTACACCACCGTCGGCGTCAAGCAATGACGCACCGATCGACATCCCCACCGCGACTCCGGTCGGTGCAACTCTTAAGCATCGTTAGGCATGAGACGGGTTATGTCTCGGATAGCGAGATCTTGATACGAGGCTCAGAACAAGAAGAACAAGAAGTACCAGAGGGTGCTGTAAAGCTGCCTGTTGGTTACTATTGGTTTAAATTCGAGGATGCAGATCTTATTACTACATCTGAAGAAGAAAAGGCAAAGAGTTACAACATGGACTCCTTTCCTGAGCCATCAGCCTTTGAACCAGAGGCTGCCCCAAAGCGTGCTGCTTACTATTGGCTTAGACTGAAGCTTGGACAACCTCTTACCCCAGCAGAGAAGGCGGCTGTTCATGATTACAGTTTGGAGGATTTCCTCGGGGACAATCTCTTATTTTGTACCATTTGTGGTGAGGAGGATCACTGGGTTTATAATTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTGAATATATTCCTCCAGGCATTACCCAACATGAAGAGAAGCCGGAGAATCCCTCTGATGTCTGGACCGACTCGGATGAAGATGTTATATTAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.88

Weight (kDa)

4.82

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	92, 413
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	294, 398
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	198, 469
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	3 cut(s)	217, 382, 638
AluI	AGCT	3 cut(s)	217, 382, 638
Alw26I	GTCTC	2 cut(s)	128, 151
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	217, 341, 356
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	204, 328, 343
BccI	CCATC	2 cut(s)	36, 328
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	128, 151
BfrI	CTTAAG	1 cut(s)	115
BglII	AGATCT	2 cut(s)	159, 256
BisI	GCNGC	4 cut(s)	218, 342, 357, 414
BlsI	GCNGC	4 cut(s)	219, 343, 358, 415
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	3 cut(s)	17, 129, 241
BmuI	ACTGGG	1 cut(s)	502
BoxI	GACNNNNGTC	1 cut(s)	100
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	315
BsaBI	GATNNNNATC	2 cut(s)	82, 255
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 290, 320
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	82, 255
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	83, 256, 625
BseJI	GATNNNNATC	2 cut(s)	82, 255
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	189, 306
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	204, 328, 343
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	2 cut(s)	80, 104
BsiEI	CGRYCG	2 cut(s)	80, 104
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	100, 587
BslFI	GGGAC	2 cut(s)	464, 556
BsmAI	GTCTC	2 cut(s)	128, 151
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	464, 556
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	4 cut(s)	77, 159, 256, 487
BspACI	CCGC	2 cut(s)	92, 413
BspCNI	CTCAG	2 cut(s)	188, 307
BspFNI	CGCG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	77, 159, 256, 487
BssNI	GRCGYC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	53, 431
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	175, 315, 371
BstF5I	GGATG	3 cut(s)	83, 256, 625
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	4 cut(s)	80, 162, 259, 490
BstMAI	GTCTC	2 cut(s)	128, 151
BstMBI	GATC	4 cut(s)	77, 159, 256, 487
BstMCI	CGRYCG	2 cut(s)	80, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	561
BstPAI	GACNNNNGTC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	204, 328, 343
BstX2I	RGATCY	2 cut(s)	159, 256
BstYI	RGATCY	2 cut(s)	159, 256
BtsCI	GGATG	3 cut(s)	83, 256, 625
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	341
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	609
CseI	GACGC	2 cut(s)	47, 79
Csp6I	GTAC	2 cut(s)	197, 468
CviAII	CATG	4 cut(s)	131, 301, 422, 575
CviQI	GTAC	2 cut(s)	197, 468
DdeI	CTNAG	3 cut(s)	175, 315, 371
DpnI	GATC	4 cut(s)	79, 161, 258, 489
DpnII	GATC	4 cut(s)	77, 159, 256, 487
DraI	TTTAAA	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	294, 398
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	4 cut(s)	134, 304, 425, 578
FaqI	GGGAC	2 cut(s)	464, 556
FatI	CATG	4 cut(s)	130, 300, 421, 574
Fnu4HI	GCNGC	4 cut(s)	218, 342, 357, 414
FokI	GGATG	3 cut(s)	70, 263, 632
Fsp4HI	GCNGC	4 cut(s)	218, 342, 357, 414
GluI	GCNGC	4 cut(s)	218, 342, 357, 414
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	543
HapII	CCGG	2 cut(s)	100, 587
HgaI	GACGC	2 cut(s)	47, 79
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	134, 304, 425, 578
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	19, 96, 305, 592, 614
HpaII	CCGG	2 cut(s)	100, 587
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	5 cut(s)	151, 178, 274, 601, 619
Hpy188III	TCNNGA	4 cut(s)	163, 314, 422, 607
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	53, 431
HpyCH4V	TGCA	3 cut(s)	8, 109, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	175, 315, 371
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	134, 304, 425, 578
Kzo9I	GATC	4 cut(s)	77, 159, 256, 487
Lsp1109I	GCAGC	3 cut(s)	204, 328, 343
LweI	GCATC	3 cut(s)	17, 129, 241
MaeIII	GTNAC	2 cut(s)	227, 293
MalI	GATC	4 cut(s)	79, 161, 258, 489
MboI	GATC	4 cut(s)	77, 159, 256, 487
MboII	GAAGA	5 cut(s)	197, 287, 290, 590, 635
MflI	RGATCY	2 cut(s)	159, 256
MluCI	AATT	3 cut(s)	40, 242, 502
MlyI	GAGTC	4 cut(s)	13, 90, 299, 608
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	3 cut(s)	116, 240, 643
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	2 cut(s)	100, 587
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	4 cut(s)	77, 159, 256, 487
NlaIII	CATG	4 cut(s)	134, 304, 425, 578
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	219, 343, 358, 415
Ple19I	CGATCG	1 cut(s)	80
PleI	GAGTC	4 cut(s)	13, 90, 299, 608
PpsI	GAGTC	4 cut(s)	13, 90, 299, 608
PshAI	GACNNNNGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	609
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	159, 256
PvuI	CGATCG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	198, 469
RsaNI	GTAC	2 cut(s)	197, 468
SaqAI	TTAA	3 cut(s)	116, 240, 643
SatI	GCNGC	4 cut(s)	218, 342, 357, 414
Sau3AI	GATC	4 cut(s)	77, 159, 256, 487
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	4 cut(s)	13, 90, 299, 608
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	4 cut(s)	219, 384, 394, 640
SfaNI	GCATC	3 cut(s)	17, 129, 241
SinI	GGWCC	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	40, 242, 502
SsiI	CCGC	2 cut(s)	92, 413
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	53, 431
TaqI	TCGA	2 cut(s)	80, 246
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	3 cut(s)	40, 242, 502
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	3 cut(s)	116, 240, 643
Tru9I	TTAA	3 cut(s)	116, 240, 643
TscAI	CASTG	1 cut(s)	497
TseI	GCWGC	3 cut(s)	217, 341, 356
TspDTI	ATGAA	3 cut(s)	410, 591, 636
TspRI	CASTG	1 cut(s)	497
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.