Rh7CG137300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008829
Physical Location & Seq
Forward (+)
11192054 .. 11198657
6604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG137300.1

Sequence Viewer

Length: 357 bp
ATGAAATACCGATCGACATCCCCACCGCCACTCCCACCGGCGAAACGTTTCCGTGAGATCTCGGTACGAGGTAGTAACACTGGTTTCTCTTCAGAACAACTTATCAAATGTGGTTCTCTTAGCAAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAAAGGTTGCCGAAAGACCAGAGGCAGCTCCAAAGGTTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTTTAAAGAAGAGGCAAAGGCCGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCGAATTTTGTACGATTTGTGGTCAGGAGGACCACTGGGAGAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.08

Weight (kDa)

5.3

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 270
AclI AACGTT 1 cut(s) 46
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 66, 319
AluBI AGCT 2 cut(s) 194, 232
AluI AGCT 2 cut(s) 194, 232
Alw26I GTCTC 1 cut(s) 311
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 143, 191
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 3 cut(s) 134, 289, 337
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 3 cut(s) 134, 289, 337
BbvI GCAGC 2 cut(s) 155, 203
BcoDI GTCTC 1 cut(s) 311
BglII AGATCT 1 cut(s) 57
BisI GCNGC 3 cut(s) 144, 192, 270
BlsI GCNGC 3 cut(s) 145, 193, 271
Bme18I GGWCC 3 cut(s) 134, 289, 337
BmgT120I GGNCC 3 cut(s) 134, 289, 337
BmrI ACTGGG 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 85, 347
Bse8I GATNNNNATC 1 cut(s) 16
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 16
BseNI ACTGG 2 cut(s) 85, 347
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 155, 203
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 11, 57
BspACI CCGC 2 cut(s) 26, 270
BspANI GGCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 85, 347
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 2 cut(s) 11, 57
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 94, 252
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 2 cut(s) 14, 60
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 11, 57
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 155, 203
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 78, 340
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 3 cut(s) 134, 289, 337
Csp6I GTAC 2 cut(s) 65, 318
CviJI RGCY 4 cut(s) 146, 194, 232, 269
CviKI_1 RGCY 4 cut(s) 146, 194, 232, 269
CviQI GTAC 2 cut(s) 65, 318
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 13, 59
DpnII GATC 2 cut(s) 11, 57
DraI TTTAAA 2 cut(s) 223, 253
Eam1104I CTCTTC 2 cut(s) 94, 252
EarI CTCTTC 2 cut(s) 94, 252
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 3 cut(s) 134, 289, 337
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 144, 192, 270
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 3 cut(s) 144, 192, 270
GluI GCNGC 3 cut(s) 144, 192, 270
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 230
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 308, 332
HpyAV CCTTC 2 cut(s) 125, 296
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 46
Kzo9I GATC 2 cut(s) 11, 57
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 51, 66, 150, 192, 198, 317, 328
Lsp1109I GCAGC 2 cut(s) 155, 203
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 74, 209
MalI GATC 2 cut(s) 13, 59
MboI GATC 2 cut(s) 11, 57
MboII GAAGA 3 cut(s) 81, 170, 269
MflI RGATCY 1 cut(s) 57
MluCI AATT 1 cut(s) 311
MnlI CCTC 9 cut(s) 62, 133, 181, 252, 253, 280, 302, 305, 328
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 222, 252
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 38
MssI GTTTAAAC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 11, 57
PdmI GAANNNNTTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 145, 193, 271
Ple19I CGATCG 1 cut(s) 14
PmeI GTTTAAAC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 289
Psp1406I AACGTT 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 289
PspPI GGNCC 3 cut(s) 134, 289, 337
PspPPI RGGWCCY 1 cut(s) 289
PsuI RGATCY 1 cut(s) 57
PvuI CGATCG 1 cut(s) 14
RsaI GTAC 2 cut(s) 66, 319
RsaNI GTAC 2 cut(s) 65, 318
SaqAI TTAA 2 cut(s) 222, 252
SatI GCNGC 3 cut(s) 144, 192, 270
Sau3AI GATC 2 cut(s) 11, 57
Sau96I GGNCC 3 cut(s) 134, 289, 337
SgrAI CRCCGGYG 1 cut(s) 37
SinI GGWCC 3 cut(s) 134, 289, 337
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 26, 270
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 14, 297, 309
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 222, 252
Tru9I TTAA 2 cut(s) 222, 252
TscAI CASTG 2 cut(s) 85, 347
TseI GCWGC 2 cut(s) 143, 191
TspDTI ATGAA 2 cut(s) 17, 315
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 85, 347
VpaK11BI GGWCC 3 cut(s) 134, 289, 337
XapI RAATTY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.