Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Forward (+)

10710229 .. 10710750

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAATCACAAACAGGTAGTAACATTGGTTTCTCTTCAGAACAACTTATCGAATGTGGTTCTCTTAGCAAGGCAGAAGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTAAAGAAGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCGAATTTTGTACGATTTGTGGTAAGGAGGACCACTGGGTATACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGAGACTAAATTCATTCCGCCAGGCATTAACCAACATGACAAGATGCCTTCTGATGTCTGGACTGACTCAGATCAAGAGTGTTTGGAAGTTTTGTGCATCCACGATTGTGTCCCAGAGGGCTTTGAGTACCCGAGTACAGTCAGTGAAATAAAAAACATACATAGAATTATGATTCAGCAGCACAACGAGATCAAGGAATACAATATGCTTTTAACCTTATTTTACTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.87

Weight (kDa)

4.51

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	209, 296
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	3 cut(s)	217, 416, 424
AjnI	CCWGG	1 cut(s)	307
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	92, 130
AluI	AGCT	2 cut(s)	92, 130
Alw26I	GTCTC	2 cut(s)	209, 284
Ama87I	CYCGRG	1 cut(s)	418
ApeKI	GCWGC	4 cut(s)	89, 101, 167, 466
ApoI	RAATTY	2 cut(s)	209, 296
AspS9I	GGNCC	3 cut(s)	80, 187, 235
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	3 cut(s)	80, 187, 235
BbvI	GCAGC	4 cut(s)	88, 101, 154, 478
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	209, 284
BisI	GCNGC	4 cut(s)	90, 102, 168, 467
BlsI	GCNGC	4 cut(s)	91, 103, 169, 468
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	3 cut(s)	80, 187, 235
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	80, 187, 235
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	321, 393
BmuI	ACTGGG	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	88, 101, 154, 478
BsiHKCI	CYCGRG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	209, 284
BsmFI	GGGAC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	358, 477
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	358, 477
BssNAI	GTATAC	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	4 cut(s)	179, 251, 427, 515
Bst6I	CTCTTC	2 cut(s)	40, 150
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	65, 355
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	2 cut(s)	361, 480
BstMAI	GTCTC	2 cut(s)	209, 284
BstMBI	GATC	2 cut(s)	358, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 167
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	4 cut(s)	88, 101, 154, 478
BstZ17I	GTATAC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	238, 436
Cfr13I	GGNCC	3 cut(s)	80, 187, 235
Csp6I	GTAC	3 cut(s)	216, 415, 423
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	5 cut(s)	92, 101, 130, 167, 408
CviKI_1	RGCY	5 cut(s)	92, 101, 130, 167, 408
CviQI	GTAC	3 cut(s)	216, 415, 423
DdeI	CTNAG	2 cut(s)	65, 355
DpnI	GATC	2 cut(s)	360, 479
DpnII	GATC	2 cut(s)	358, 477
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	40, 150
EarI	CTCTTC	2 cut(s)	40, 150
EciI	GGCGGA	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	80, 187, 235
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	1 cut(s)	326
FaiI	YATR	9 cut(s)	247, 267, 276, 286, 324, 446, 450, 458, 494
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	90, 102, 168, 467
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	90, 102, 168, 467
GluI	GCNGC	4 cut(s)	90, 102, 168, 467
Hin1II	CATG	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	5, 353, 460
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	40, 340, 358
Hpy188III	TCNNGA	3 cut(s)	206, 346, 362
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	71, 194, 345
HpyCH4III	ACNGT	4 cut(s)	179, 251, 427, 515
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 167
HpyF3I	CTNAG	2 cut(s)	65, 355
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	358, 477
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	90, 96, 226, 294, 321, 331, 414
Lsp1109I	GCAGC	4 cut(s)	88, 101, 154, 478
LweI	GCATC	2 cut(s)	321, 393
MaeIII	GTNAC	2 cut(s)	20, 107
MalI	GATC	2 cut(s)	360, 479
MboI	GATC	2 cut(s)	358, 477
MboII	GAAGA	2 cut(s)	27, 167
MluCI	AATT	3 cut(s)	209, 296, 453
MlyI	GAGTC	1 cut(s)	347
MseI	TTAA	3 cut(s)	120, 315, 500
MslI	CAYNNNNRTG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	309
MssI	GTTTAAAC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	98, 167
NdeII	GATC	2 cut(s)	358, 477
NlaIII	CATG	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	5, 460
PkrI	GCNGC	4 cut(s)	91, 103, 169, 468
PleI	GAGTC	1 cut(s)	347
PmeI	GTTTAAAC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspPI	GGNCC	3 cut(s)	80, 187, 235
PspPPI	RGGWCCY	1 cut(s)	187
RsaI	GTAC	3 cut(s)	217, 416, 424
RsaNI	GTAC	3 cut(s)	216, 415, 423
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	120, 315, 500
SatI	GCNGC	4 cut(s)	90, 102, 168, 467
Sau3AI	GATC	2 cut(s)	358, 477
Sau96I	GGNCC	3 cut(s)	80, 187, 235
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	8 cut(s)	19, 94, 132, 142, 149, 192, 205, 506
SfaNI	GCATC	2 cut(s)	321, 393
SinI	GGWCC	3 cut(s)	80, 187, 235
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	209, 296, 453
SsiI	CCGC	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	4 cut(s)	179, 251, 427, 515
TaqI	TCGA	3 cut(s)	51, 195, 207
TasI	AATT	3 cut(s)	209, 296, 453
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	5, 460
Tru1I	TTAA	3 cut(s)	120, 315, 500
Tru9I	TTAA	3 cut(s)	120, 315, 500
TscAI	CASTG	2 cut(s)	245, 436
TseI	GCWGC	4 cut(s)	89, 101, 167, 466
TspDTI	ATGAA	2 cut(s)	213, 289
TspRI	CASTG	2 cut(s)	245, 436
VpaK11BI	GGWCC	3 cut(s)	80, 187, 235
XapI	RAATTY	2 cut(s)	209, 296
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.