Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Forward (+)

48100705 .. 48104890

Gene Structure 4186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATGACCTTTCATTTGAGTTTAATTATGGAATCACAAACAGGTAGAAACACTGGTTTCTCTTCAGAAAAACCTATCAAATGTGATTCTCTTTGCAAGGCAAAAGGACCAGAGGCAGCCCTGAAGGGTGAAGAAAAACCAATGGCTGCCAAAGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTGAAGCTTGGAGAACCTCTTACCTCTAAAGAAAAGGCAAAGGCTGCTGATTATAGTTTGGAGGACCTCCTCGACGAAGGTCTCACATTTTGTACAATTTGTGGTCTGGAGAACCACCGCGCTTACAGTTGTGTGAAATACTATGAGGAATATAAATGTCCATATGGGAGTACATTTGTTCCGCCAGGCATTAGCAAATATGACAAGAAGCCGTCTGATATCTGGACTGACTTGGATGAAGAGTATTTTAGAATTTTGTGCATCGACGATTATGTCCCAGAGGGCTTTGAGTACCTGCGTAAAGTCAGTGAAATAAAAAACATTCATAGAGTTATGATTCAGCAGCACAATGAGATCGAGGAATTAGGTATGCTTTTAACTTCATTTTACTGGTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

5.36

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	501
AccII	CGCG	1 cut(s)	318
AciI	CCGC	2 cut(s)	316, 380
AcsI	RAATTY	1 cut(s)	450
AcuI	CTGAAG	3 cut(s)	48, 143, 221
AfaI	GTAC	3 cut(s)	292, 370, 491
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	167, 205
AluI	AGCT	2 cut(s)	167, 205
Alw26I	GTCTC	1 cut(s)	284
ApeKI	GCWGC	6 cut(s)	116, 146, 164, 176, 242, 541
ApoI	RAATTY	1 cut(s)	450
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	107, 155, 262
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	107, 155, 262
BbvI	GCAGC	6 cut(s)	128, 133, 163, 176, 229, 553
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	501
BisI	GCNGC	6 cut(s)	117, 147, 165, 177, 243, 542
BlsI	GCNGC	6 cut(s)	118, 148, 166, 178, 244, 543
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	3 cut(s)	107, 155, 262
BmgT120I	GGNCC	3 cut(s)	107, 155, 262
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	58, 593
BseBI	CCWGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	439
BseNI	ACTGG	2 cut(s)	58, 593
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	128, 133, 163, 176, 229, 553
Bsh1236I	CGCG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	552
BspACI	CCGC	2 cut(s)	316, 380
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	596
BspMI	ACCTGC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	58, 593
BssMI	GATC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	67, 432
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	555
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 242
BstNI	CCWGG	1 cut(s)	384
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	6 cut(s)	128, 133, 163, 176, 229, 553
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	51, 511
BveI	ACCTGC	1 cut(s)	501
CciI	TCATGA	1 cut(s)	596
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	107, 155, 262
Csp6I	GTAC	3 cut(s)	291, 369, 490
CviAII	CATG	1 cut(s)	597
CviJI	RGCY	8 cut(s)	119, 146, 167, 176, 205, 242, 409, 483
CviKI_1	RGCY	8 cut(s)	119, 146, 167, 176, 205, 242, 409, 483
CviQI	GTAC	3 cut(s)	291, 369, 490
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
DraI	TTTAAA	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
Eam1104I	CTCTTC	2 cut(s)	67, 432
EarI	CTCTTC	2 cut(s)	67, 432
EciI	GGCGGA	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	3 cut(s)	107, 155, 262
Eco57I	CTGAAG	3 cut(s)	48, 143, 221
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	382
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	1 cut(s)	600
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	6 cut(s)	117, 147, 165, 177, 243, 542
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	6 cut(s)	117, 147, 165, 177, 243, 542
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	6 cut(s)	117, 147, 165, 177, 243, 542
GsuI	CTGGAG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	600
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	32, 86, 535
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	67, 415
Hpy188III	TCNNGA	3 cut(s)	305, 421, 597
Hpy99I	CGWCG	2 cut(s)	275, 467
HpyAV	CCTTC	2 cut(s)	118, 269
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	96, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 242
Hsp92II	CATG	1 cut(s)	600
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	552
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	6 cut(s)	128, 133, 163, 176, 229, 553
LweI	GCATC	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	3 cut(s)	54, 143, 449
MluCI	AATT	4 cut(s)	24, 294, 450, 560
MseI	TTAA	3 cut(s)	23, 195, 575
MspR9I	CCNGG	1 cut(s)	384
MssI	GTTTAAAC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	173, 242
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	552
NlaIII	CATG	1 cut(s)	600
PagI	TCATGA	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	32, 86, 535
PkrI	GCNGC	6 cut(s)	118, 148, 166, 178, 244, 543
PmeI	GTTTAAAC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspPI	GGNCC	3 cut(s)	107, 155, 262
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	3 cut(s)	292, 370, 491
RsaNI	GTAC	3 cut(s)	291, 369, 490
SaqAI	TTAA	3 cut(s)	23, 195, 575
SatI	GCNGC	6 cut(s)	117, 147, 165, 177, 243, 542
Sau3AI	GATC	1 cut(s)	552
Sau96I	GGNCC	3 cut(s)	107, 155, 262
ScrFI	CCNGG	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	3 cut(s)	107, 155, 262
Sse9I	AATT	4 cut(s)	24, 294, 450, 560
SsiI	CCGC	2 cut(s)	316, 380
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	270, 462, 555
TasI	AATT	4 cut(s)	24, 294, 450, 560
TatI	WGTACW	2 cut(s)	290, 368
TfiI	GAWTC	3 cut(s)	32, 86, 535
Tru1I	TTAA	3 cut(s)	23, 195, 575
Tru9I	TTAA	3 cut(s)	23, 195, 575
TscAI	CASTG	2 cut(s)	58, 511
TseI	GCWGC	6 cut(s)	116, 146, 164, 176, 242, 541
TspDTI	ATGAA	3 cut(s)	450, 512, 570
TspRI	CASTG	2 cut(s)	58, 511
VpaK11BI	GGWCC	3 cut(s)	107, 155, 262
XapI	RAATTY	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.