Rh7DG365000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008829
Physical Location & Seq
Forward (+)
48872591 .. 48875763
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG365000.1

Sequence Viewer

Length: 651 bp
ATGAAGAACCGATCCACATCCCCACCGCCACTCTCACCGGCGAAACGTATCCGCATCTATTTGCGTGTGACGGGTTATTTCTCGGACAGCGAGATCTCGGTACAAGGTAGAAACACTGGTTTCTCTTCAGACAAACCTATCAAATGTGATTCTCTTCGCAAGGCAAAACGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTGAAGCTTGGAGAACCTCTTACCTCTAAAGAAAAGGCAAAGGCTGCTGATTATAGTTTGGAGGACCTCCTCGACGAAGGTCTCACATTTTGTACAATTTGTGGTCTGGAGAACCACCGCGCTTACAGTTGTGTGAAATACTATGAGGAATATAAATGTCCATATGGGAGTACATTTGTTCCGCCAGGCATTAACAAATATGACAAGAAGCCGACTGATATATGGACTGACTTGGATGAAGAGTATCTTAGAATTTTGTGCATCGACGATTATGTCCCAGAGGGCTTTGAGCACCTGCGTAAAGTCAGTGAAATAAAAAACATTCACAGAGTTATGATTCAGCAGCACAACGAGATCGAGGAATTAGTTGGTGCTGGAATGGAACCCAAATGTGGGGTAAGAAAGACTAGTGGTGAGTATGACCACCAGACGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.73

Weight (kDa)

7.55

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 516
AasI GACNNNNNNGTC 1 cut(s) 485
Acc36I ACCTGC 1 cut(s) 516
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 26, 52, 331, 395
AclWI GGATC 1 cut(s) 6
AcsI RAATTY 1 cut(s) 465
AcuI CTGAAG 2 cut(s) 111, 236
AfaI GTAC 3 cut(s) 102, 307, 385
AfiI CCNNNNNNNGG 2 cut(s) 605, 606
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 182, 220
AluI AGCT 2 cut(s) 182, 220
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 1 cut(s) 6
ApeKI GCWGC 4 cut(s) 179, 191, 257, 556
ApoI RAATTY 1 cut(s) 465
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 27, 638
AvaII GGWCC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 4 cut(s) 178, 191, 244, 568
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfuAI ACCTGC 1 cut(s) 516
BfuI GTATCC 1 cut(s) 59
BglII AGATCT 1 cut(s) 93
BisI GCNGC 4 cut(s) 180, 192, 258, 557
BlsI GCNGC 4 cut(s) 181, 193, 259, 558
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 63, 483
BoxI GACNNNNGTC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 606
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 1 cut(s) 399
BseGI GGATG 2 cut(s) 17, 454
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 605, 606
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 4 cut(s) 178, 191, 244, 568
Bsh1236I CGCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 2 cut(s) 605, 606
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 473
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 507
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 3 cut(s) 11, 93, 567
BspACI CCGC 4 cut(s) 26, 52, 331, 395
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 597
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 3 cut(s) 11, 93, 567
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 3 cut(s) 130, 159, 447
BstAPI GCANNNNNTGC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 2 cut(s) 17, 454
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 3 cut(s) 14, 96, 570
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 3 cut(s) 11, 93, 567
BstMWI GCNNNNNNNGC 2 cut(s) 188, 257
BstNI CCWGG 1 cut(s) 399
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 4 cut(s) 178, 191, 244, 568
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 17, 454
BtsIMutI CAGTG 2 cut(s) 114, 526
BveI ACCTGC 1 cut(s) 516
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 3 cut(s) 101, 306, 384
CviJI RGCY 6 cut(s) 182, 191, 220, 257, 424, 498
CviKI_1 RGCY 6 cut(s) 182, 191, 220, 257, 424, 498
CviQI GTAC 3 cut(s) 101, 306, 384
DdeI CTNAG 1 cut(s) 461
DpnI GATC 3 cut(s) 13, 95, 569
DpnII GATC 3 cut(s) 11, 93, 567
DraI TTTAAA 1 cut(s) 211
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
Eam1104I CTCTTC 3 cut(s) 130, 159, 447
EarI CTCTTC 3 cut(s) 130, 159, 447
EciI GGCGGA 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 111, 236
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 397
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 473
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 4 cut(s) 180, 192, 258, 557
FokI GGATG 2 cut(s) 4, 461
Fsp4HI GCNGC 4 cut(s) 180, 192, 258, 557
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 334
GluI GCNGC 4 cut(s) 180, 192, 258, 557
GsuI CTGGAG 1 cut(s) 341
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 335
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 149, 550
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 27, 638
Hpy188I TCNGA 2 cut(s) 85, 130
Hpy188III TCNNGA 1 cut(s) 320
Hpy99I CGWCG 2 cut(s) 290, 482
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 257
HpyF3I CTNAG 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 46
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 3 cut(s) 11, 93, 567
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 4 cut(s) 178, 191, 244, 568
LweI GCATC 2 cut(s) 63, 483
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 67, 197
MalI GATC 3 cut(s) 13, 95, 569
MboI GATC 3 cut(s) 11, 93, 567
MboII GAAGA 4 cut(s) 16, 117, 146, 464
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 3 cut(s) 309, 465, 575
MnlI CCTC 9 cut(s) 169, 240, 247, 268, 290, 293, 352, 487, 565
MseI TTAA 2 cut(s) 210, 405
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 399
MssI GTTTAAAC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 188, 257
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 11, 93, 567
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 149, 550
PkrI GCNGC 4 cut(s) 181, 193, 259, 558
PmeI GTTTAAAC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 3 cut(s) 102, 307, 385
RsaNI GTAC 3 cut(s) 101, 306, 384
SaqAI TTAA 2 cut(s) 210, 405
SatI GCNGC 4 cut(s) 180, 192, 258, 557
Sau3AI GATC 3 cut(s) 11, 93, 567
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 2 cut(s) 63, 483
SgrAI CRCCGGYG 1 cut(s) 37
SinI GGWCC 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 3 cut(s) 309, 465, 575
SsiI CCGC 4 cut(s) 26, 52, 331, 395
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 285, 477, 570
TasI AATT 3 cut(s) 309, 465, 575
TatI WGTACW 2 cut(s) 305, 383
TfiI GAWTC 2 cut(s) 149, 550
Tru1I TTAA 2 cut(s) 210, 405
Tru9I TTAA 2 cut(s) 210, 405
TscAI CASTG 2 cut(s) 121, 526
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 4 cut(s) 179, 191, 257, 556
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 17, 465
TspRI CASTG 2 cut(s) 121, 526
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 465
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.