Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

64445598 .. 64453827

Gene Structure 8230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG479600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTCCCAATCGGCCCCAGCGGCACTTCCACCGGAGGGGAAACGTGTCAGCTCGACATCTCTCACGGAAAACAACGAGATCTTGGCTATAGGTAGCAAGGGTGAAGCACCATATGTTGACTGTTATAGTTTGAATAGACTCTGCCGAGAAATTGTCAAGGGTCTTGTGATTTCTGAAGCTGGCAAGGATGAACTAGAGGATGTGCTAGGGATCACTGATCCACATGAGAACAGCTGTGCCGCAAGTATGAGGAACCGATCGACAACCCCACCGCCACTCCCACCGGCGAAACGTTTATGCATCGATAGGCATGTGATGGGTTATCTCTCGGACAGCGAGATCTCGGTACGAGGTGGTAACACTGGTTTCTCTTCGGAAAAAATGGTCAAGTGCTGTTCTCCTAGCAAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAATCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAAAGGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCAAATTTTGTACAATTTGTGGTCAGGAGGACCACTGGGTTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCGCCACGCATTAACCAACATGACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGCATTTGGATCTTTTGTGCATCAAAGATTATGTCCCAGAGGGCTTTGAGTACCTGCATACAGTCAGTGAAATAAAAAACATACATAGAATTATGATTCAGCAGCACAACGAGATCAAGGTTTACGTTAGCTCCGGAATCGAGCCCGATTGTGCGGTAAGAAAGACCAGTGGTGAGTCTGACGATGAAGCATGCAATGAAGGACGAGGACAAGGATGTGGATTGAAGATGGAATGGATTGCTGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

37.56

Weight (kDa)

4.87

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	905
AciI	CCGC	5 cut(s)	23, 243, 275, 713, 926
AclI	AACGTT	1 cut(s)	295
AclWI	GGATC	3 cut(s)	215, 221, 789
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	2 cut(s)	198, 579
AfaI	GTAC	3 cut(s)	351, 625, 824
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	136, 997
AluBI	AGCT	6 cut(s)	54, 182, 237, 500, 538, 903
AluI	AGCT	6 cut(s)	54, 182, 237, 500, 538, 903
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	3 cut(s)	215, 221, 789
Aor13HI	TCCGGA	1 cut(s)	905
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	7 cut(s)	428, 458, 497, 509, 575, 874, 1013
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	789, 821
AspS9I	GGNCC	5 cut(s)	16, 419, 488, 595, 643
AsuHPI	GGTGA	4 cut(s)	116, 452, 482, 956
AvaII	GGWCC	4 cut(s)	419, 488, 595, 643
BanII	GRGCYC	1 cut(s)	918
BbvI	GCAGC	7 cut(s)	440, 470, 496, 509, 562, 886, 1000
BccI	CCATC	2 cut(s)	313, 994
BceAI	ACGGC	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	3 cut(s)	197, 209, 405
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	834
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	2 cut(s)	81, 342
BisI	GCNGC	9 cut(s)	24, 243, 429, 459, 498, 510, 576, 875, 1014
BlsI	GCNGC	9 cut(s)	25, 244, 430, 460, 499, 511, 577, 876, 1015
Bme18I	GGWCC	4 cut(s)	419, 488, 595, 643
BmgT120I	GGNCC	5 cut(s)	16, 419, 488, 595, 643
BmiI	GGNNCC	3 cut(s)	18, 257, 489
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	3 cut(s)	312, 729, 801
BmuI	ACTGGG	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	617
BsaWI	WCCGGW	2 cut(s)	34, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 887, 917
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	370, 653, 939
Bse3DI	GCAATG	1 cut(s)	973
BseAI	TCCGGA	1 cut(s)	905
BseCI	ATCGAT	1 cut(s)	306
BseGI	GGATG	3 cut(s)	196, 208, 992
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	3 cut(s)	370, 653, 939
BseRI	GAGGAG	2 cut(s)	578, 590
BseXI	GCAGC	7 cut(s)	440, 470, 496, 509, 562, 886, 1000
BseYI	CCCAGC	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	35, 287, 906
BslFI	GGGAC	3 cut(s)	501, 712, 791
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	3 cut(s)	501, 712, 791
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp13I	TCCGGA	1 cut(s)	905
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
BspACI	CCGC	5 cut(s)	23, 243, 275, 713, 926
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	776
BspDI	ATCGAT	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	905
BspLI	GGNNCC	3 cut(s)	18, 257, 489
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	3 cut(s)	215, 221, 789
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	973
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	370, 653, 939
BssAI	RCCGGY	1 cut(s)	286
BssMI	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
Bst4CI	ACNGT	4 cut(s)	125, 587, 659, 835
Bst6I	CTCTTC	2 cut(s)	379, 555
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	184, 964
BstDEI	CTNAG	1 cut(s)	763
BstF5I	GGATG	3 cut(s)	196, 208, 992
BstKTI	GATC	8 cut(s)	84, 216, 223, 263, 345, 769, 784, 888
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 506, 575
BstNSI	RCATGY	2 cut(s)	317, 966
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	7 cut(s)	440, 470, 496, 509, 562, 886, 1000
BstX2I	RGATCY	3 cut(s)	81, 342, 781
BstYI	RGATCY	3 cut(s)	81, 342, 781
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	196, 208, 992
BtsIMutI	CAGTG	5 cut(s)	216, 363, 646, 844, 946
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	2 cut(s)	184, 964
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	5 cut(s)	16, 419, 488, 595, 643
ClaI	ATCGAT	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	350, 624, 823
CviAII	CATG	4 cut(s)	227, 314, 731, 963
CviQI	GTAC	3 cut(s)	350, 624, 823
DdeI	CTNAG	1 cut(s)	763
DpnI	GATC	8 cut(s)	83, 215, 222, 262, 344, 768, 783, 887
DpnII	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
DraI	TTTAAA	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	379, 555
EarI	CTCTTC	2 cut(s)	379, 555
EciI	GGCGGA	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	918
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	4 cut(s)	419, 488, 595, 643
Eco57I	CTGAAG	2 cut(s)	198, 579
EcoO109I	RGGNCCY	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	918
FaeI	CATG	4 cut(s)	230, 317, 734, 966
FaqI	GGGAC	3 cut(s)	501, 712, 791
FatI	CATG	4 cut(s)	226, 313, 730, 962
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	9 cut(s)	24, 243, 429, 459, 498, 510, 576, 875, 1014
FokI	GGATG	3 cut(s)	203, 215, 999
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	9 cut(s)	24, 243, 429, 459, 498, 510, 576, 875, 1014
FspBI	CTAG	3 cut(s)	197, 209, 405
GluI	GCNGC	9 cut(s)	24, 243, 429, 459, 498, 510, 576, 875, 1014
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	35, 287, 906
Hin1II	CATG	4 cut(s)	230, 317, 734, 966
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	5, 141, 761, 868, 909, 947
HpaII	CCGG	3 cut(s)	35, 287, 906
HphI	GGTGA	4 cut(s)	116, 452, 482, 956
Hpy166II	GTNNAC	3 cut(s)	121, 655, 895
Hpy188I	TCNGA	8 cut(s)	178, 334, 379, 454, 559, 748, 766, 952
Hpy188III	TCNNGA	4 cut(s)	638, 754, 770, 906
Hpy8I	GTNNAC	3 cut(s)	121, 655, 895
HpyAV	CCTTC	3 cut(s)	410, 602, 965
HpyCH4III	ACNGT	4 cut(s)	125, 587, 659, 835
HpyCH4IV	ACGT	3 cut(s)	46, 295, 897
HpyCH4V	TGCA	4 cut(s)	303, 792, 829, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 506, 575
HpyF3I	CTNAG	1 cut(s)	763
HpySE526I	ACGT	3 cut(s)	46, 295, 897
Hsp92II	CATG	4 cut(s)	230, 317, 734, 966
Kpn2I	TCCGGA	1 cut(s)	905
Kzo9I	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
LmnI	GCTCC	2 cut(s)	505, 908
Lsp1109I	GCAGC	7 cut(s)	440, 470, 496, 509, 562, 886, 1000
LweI	GCATC	3 cut(s)	312, 729, 801
MaeI	CTAG	3 cut(s)	197, 209, 405
MaeII	ACGT	3 cut(s)	46, 295, 897
MaeIII	GTNAC	2 cut(s)	359, 515
MalI	GATC	8 cut(s)	83, 215, 222, 262, 344, 768, 783, 887
MboI	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
MboII	GAAGA	5 cut(s)	366, 455, 485, 572, 1009
MflI	RGATCY	3 cut(s)	81, 342, 781
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	4 cut(s)	153, 617, 627, 861
MlyI	GAGTC	4 cut(s)	14, 135, 755, 956
Mph1103I	ATGCAT	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	905
MseI	TTAA	2 cut(s)	528, 723
MspA1I	CMGCKG	2 cut(s)	23, 237
MspI	CCGG	3 cut(s)	35, 287, 906
MssI	GTTTAAAC	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	23, 506, 575
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
NlaIII	CATG	4 cut(s)	230, 317, 734, 966
NlaIV	GGNNCC	3 cut(s)	18, 257, 489
NmeAIII	GCCGAG	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	2 cut(s)	317, 966
PaeI	GCATGC	1 cut(s)	966
PfeI	GAWTC	2 cut(s)	868, 909
PkrI	GCNGC	9 cut(s)	25, 244, 430, 460, 499, 511, 577, 876, 1015
Ple19I	CGATCG	1 cut(s)	263
PleI	GAGTC	4 cut(s)	13, 135, 755, 955
PmeI	GTTTAAAC	1 cut(s)	529
PpsI	GAGTC	4 cut(s)	13, 135, 755, 955
PpuMI	RGGWCCY	1 cut(s)	595
Psp1406I	AACGTT	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	18, 257, 489
PspPI	GGNCC	5 cut(s)	16, 419, 488, 595, 643
PspPPI	RGGWCCY	1 cut(s)	595
PsuI	RGATCY	3 cut(s)	81, 342, 781
PvuI	CGATCG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	351, 625, 824
RsaNI	GTAC	3 cut(s)	350, 624, 823
SaqAI	TTAA	2 cut(s)	528, 723
SatI	GCNGC	9 cut(s)	24, 243, 429, 459, 498, 510, 576, 875, 1014
Sau3AI	GATC	8 cut(s)	81, 213, 220, 260, 342, 766, 781, 885
Sau96I	GGNCC	5 cut(s)	16, 419, 488, 595, 643
SchI	GAGTC	4 cut(s)	14, 135, 755, 956
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	3 cut(s)	312, 729, 801
SfcI	CTRYAG	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	4 cut(s)	419, 488, 595, 643
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	966
Sse9I	AATT	4 cut(s)	153, 617, 627, 861
SsiI	CCGC	5 cut(s)	23, 243, 275, 713, 926
SspMI	CTAG	3 cut(s)	197, 209, 405
TaaI	ACNGT	4 cut(s)	125, 587, 659, 835
TaiI	ACGT	3 cut(s)	49, 298, 900
TaqI	TCGA	5 cut(s)	56, 263, 306, 603, 912
TasI	AATT	4 cut(s)	153, 617, 627, 861
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	26, 245
TfiI	GAWTC	2 cut(s)	868, 909
Tru1I	TTAA	2 cut(s)	528, 723
Tru9I	TTAA	2 cut(s)	528, 723
TscAI	CASTG	5 cut(s)	223, 370, 653, 844, 946
TseI	GCWGC	7 cut(s)	428, 458, 497, 509, 575, 874, 1013
TspDTI	ATGAA	5 cut(s)	207, 621, 697, 972, 984
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	5 cut(s)	223, 370, 653, 844, 946
VpaK11BI	GGWCC	4 cut(s)	419, 488, 595, 643
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	2 cut(s)	317, 966
XspI	CTAG	3 cut(s)	197, 209, 405
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.