Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

66788559 .. 66791028

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGGAACCGATCGACAACCCCACCGCCACCGCCACCCCCACCCCCACCGGCGAAACGTTTATGCATCGATAGGCATGTGATGGGTTATCTCTCGGACAGCGAGATCTCGGTACGAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAGAGGCAGCCCTAAAGTGTGAAGAAAAACCAGAGGCAGCCCTAAAGTGTGAAGAAAAACCAGAGGCAGCCCTAAAGGGTGAAGAAAAATCAGAGGCAGCCCTAAAGTGTGAAGCAAAACCAGAGGCAGCCCTAAATGGTGAAGAAAAACCAGAGGCTGCCGAAGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGACGAAGGTCTCGACTTTTGTACGATTTGTGGTCAGGAGGACCACTGGGTTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCGCCAGGCATTAACCAACATGACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGCATTTGGATCTTTTGTGCATCAAAGATTATGTCCCAGAGGGCTTTGAGTACCTGCATACAGTCAGTGAAGTAAAAAACATACATAGAATTATGATTCAGCAGCACAACGAGATCAAGGATTACGTTAACTCCGGAATCGAGCCTGATTGTGCGGTAAGAAAGACCGGTGGTGAGTCTGACGATGAAGCATGCAATGAAGGACGAGGACAAGGATGTGGATTGAAGATGGAATGGATTGCTGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.66

Weight (kDa)

4.64

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	767
AciI	CCGC	4 cut(s)	26, 32, 575, 788
AclI	AACGTT	1 cut(s)	58
AclWI	GGATC	1 cut(s)	651
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	3 cut(s)	114, 487, 686
AgeI	ACCGGT	1 cut(s)	800
AgsI	TTSAA	1 cut(s)	859
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	2 cut(s)	362, 400
AluI	AGCT	2 cut(s)	362, 400
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	767
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AsiGI	ACCGGT	1 cut(s)	800
AspS9I	GGNCC	4 cut(s)	122, 350, 457, 505
AsuHPI	GGTGA	5 cut(s)	155, 185, 275, 335, 818
AvaII	GGWCC	4 cut(s)	122, 350, 457, 505
BccI	CCATC	2 cut(s)	76, 856
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	696
BglII	AGATCT	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	4 cut(s)	122, 350, 457, 505
BmgT120I	GGNCC	4 cut(s)	122, 350, 457, 505
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	579
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	3 cut(s)	75, 591, 663
BmuI	ACTGGG	1 cut(s)	520
BoxI	GACNNNNGTC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	479
BsaWI	WCCGGW	2 cut(s)	767, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bse118I	RCCGGY	2 cut(s)	49, 800
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	835
BseAI	TCCGGA	1 cut(s)	767
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	69
BseGI	GGATG	1 cut(s)	854
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	2 cut(s)	440, 452
Bsh1285I	CGRYCG	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	800
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	50, 768, 801
BslFI	GGGAC	2 cut(s)	574, 653
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	574, 653
Bso31I	GGTCTC	1 cut(s)	479
Bsp13I	TCCGGA	1 cut(s)	767
Bsp143I	GATC	5 cut(s)	11, 105, 628, 643, 747
BspACI	CCGC	4 cut(s)	26, 32, 575, 788
BspCNI	CTCAG	1 cut(s)	638
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	8
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	835
BsrFI	RCCGGY	2 cut(s)	49, 800
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	2 cut(s)	49, 800
BssMI	GATC	5 cut(s)	11, 105, 628, 643, 747
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	449, 521, 697
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	826
BstDEI	CTNAG	1 cut(s)	625
BstF5I	GGATG	1 cut(s)	854
BstKTI	GATC	5 cut(s)	14, 108, 631, 646, 750
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	5 cut(s)	11, 105, 628, 643, 747
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 437
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	2 cut(s)	80, 828
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	105, 643
BstYI	RGATCY	2 cut(s)	105, 643
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	854
BtsIMutI	CAGTG	2 cut(s)	508, 706
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	826
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr10I	RCCGGY	2 cut(s)	49, 800
Cfr13I	GGNCC	4 cut(s)	122, 350, 457, 505
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	113, 486, 685
CspAI	ACCGGT	1 cut(s)	800
CviAII	CATG	3 cut(s)	77, 593, 825
CviQI	GTAC	3 cut(s)	113, 486, 685
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	5 cut(s)	13, 107, 630, 645, 749
DpnII	GATC	5 cut(s)	11, 105, 628, 643, 747
DraI	TTTAAA	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	4 cut(s)	122, 350, 457, 505
Eco57I	CTGAAG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	3 cut(s)	80, 596, 828
FaqI	GGGAC	2 cut(s)	574, 653
FatI	CATG	3 cut(s)	76, 592, 824
FokI	GGATG	1 cut(s)	861
HapII	CCGG	3 cut(s)	50, 768, 801
Hin1II	CATG	3 cut(s)	80, 596, 828
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	4 cut(s)	623, 730, 771, 809
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	3 cut(s)	50, 768, 801
HphI	GGTGA	5 cut(s)	155, 185, 275, 335, 818
Hpy166II	GTNNAC	2 cut(s)	517, 763
Hpy188I	TCNGA	6 cut(s)	97, 277, 421, 610, 628, 814
Hpy188III	TCNNGA	5 cut(s)	476, 500, 616, 632, 768
Hpy8I	GTNNAC	2 cut(s)	517, 763
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	113, 341, 464, 827
HpyCH4III	ACNGT	3 cut(s)	449, 521, 697
HpyCH4IV	ACGT	2 cut(s)	58, 759
HpyCH4V	TGCA	4 cut(s)	66, 654, 691, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 437
HpyF3I	CTNAG	1 cut(s)	625
HpySE526I	ACGT	2 cut(s)	58, 759
Hsp92II	CATG	3 cut(s)	80, 596, 828
Kpn2I	TCCGGA	1 cut(s)	767
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	5 cut(s)	11, 105, 628, 643, 747
LmnI	GCTCC	1 cut(s)	367
LweI	GCATC	3 cut(s)	75, 591, 663
MaeII	ACGT	2 cut(s)	58, 759
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	5 cut(s)	13, 107, 630, 645, 749
MboI	GATC	5 cut(s)	11, 105, 628, 643, 747
MboII	GAAGA	8 cut(s)	158, 188, 218, 248, 278, 338, 434, 871
MflI	RGATCY	2 cut(s)	105, 643
MluCI	AATT	1 cut(s)	723
MlyI	GAGTC	2 cut(s)	617, 818
Mph1103I	ATGCAT	1 cut(s)	68
MroI	TCCGGA	1 cut(s)	767
MseI	TTAA	3 cut(s)	390, 585, 762
MspI	CCGG	3 cut(s)	50, 768, 801
MspR9I	CCNGG	1 cut(s)	579
MssI	GTTTAAAC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	368, 437
NdeII	GATC	5 cut(s)	11, 105, 628, 643, 747
NlaIII	CATG	3 cut(s)	80, 596, 828
NlaIV	GGNNCC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	80, 828
PaeI	GCATGC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	730, 771
PinAI	ACCGGT	1 cut(s)	800
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	617, 817
PmeI	GTTTAAAC	1 cut(s)	391
PpsI	GAGTC	2 cut(s)	617, 817
PpuMI	RGGWCCY	1 cut(s)	457
PshAI	GACNNNNGTC	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	4 cut(s)	122, 350, 457, 505
PspPPI	RGGWCCY	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	105, 643
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	114, 487, 686
RsaNI	GTAC	3 cut(s)	113, 486, 685
SaqAI	TTAA	3 cut(s)	390, 585, 762
Sau3AI	GATC	5 cut(s)	11, 105, 628, 643, 747
Sau96I	GGNCC	4 cut(s)	122, 350, 457, 505
SchI	GAGTC	2 cut(s)	617, 818
ScrFI	CCNGG	1 cut(s)	579
SetI	ASST	9 cut(s)	61, 364, 402, 412, 419, 462, 475, 690, 762
SfaNI	GCATC	3 cut(s)	75, 591, 663
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	4 cut(s)	122, 350, 457, 505
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	828
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	4 cut(s)	26, 32, 575, 788
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	3 cut(s)	449, 521, 697
TaiI	ACGT	2 cut(s)	61, 762
TaqI	TCGA	5 cut(s)	14, 69, 465, 477, 774
TasI	AATT	1 cut(s)	723
TfiI	GAWTC	2 cut(s)	730, 771
Tru1I	TTAA	3 cut(s)	390, 585, 762
Tru9I	TTAA	3 cut(s)	390, 585, 762
TscAI	CASTG	2 cut(s)	515, 706
TspDTI	ATGAA	3 cut(s)	559, 834, 846
TspRI	CASTG	2 cut(s)	515, 706
VpaK11BI	GGWCC	4 cut(s)	122, 350, 457, 505
XceI	RCATGY	2 cut(s)	80, 828
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.