Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

71085052 .. 71085570

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG505500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGCAGCTTTTGTTGGGTAAACGTTATCTGATTGTGTTGGATGGTGTTTGGCATATGAATGCCTTCTATTGCTCTTTAGGGAATAACAATGTCAACGGCATGGATCGCCTATCGGATGGCTTGCCTTGGGATAGTGGCGGTGCTGTGATCGTCACTAGTAGGAGGCTGGAAGTGGCTCAACAAATGGTGGGCGCAGATAACTTGATTATTCCTGTCAAGCCTATGGACAAACAAAACTGCTGGTGTATATTAATGGATGCTATACTGCGTGATGATCATCAGGGTGTCTATAATTATACTAATGATATTAAAGACAATAATCATGATTTTGATCCTAGTAGAGAGGAAAAGTTTAGCGAACAAGCTCCTGCAAAAGCTTTGAATAGGATCAAGGATCAAATTGAGGAGGAATTTCAGGGTCTACCATTTGCTGCTAAGGTACTCGCAACCGCCTTTCCTGGACACATTCGTACAAGAGATGCAGGAAGGTTCCCAATAGAGTTTGAGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

172

Amino Acids

19.51

Weight (kDa)

5.34

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	2 - 89	3.3e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	2 cut(s)	141, 453
AclI	AACGTT	1 cut(s)	25
AclWI	GGATC	4 cut(s)	114, 329, 398, 405
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	2 cut(s)	444, 475
AgsI	TTSAA	1 cut(s)	385
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	10, 368, 380
AluI	AGCT	3 cut(s)	10, 368, 380
AlwI	GGATC	4 cut(s)	114, 329, 398, 405
ApeKI	GCWGC	2 cut(s)	7, 434
ApoI	RAATTY	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	19, 421
BccI	CCATC	2 cut(s)	38, 113
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	2 cut(s)	159, 339
BisI	GCNGC	2 cut(s)	8, 435
BlsI	GCNGC	2 cut(s)	9, 436
Bme1390I	CCNGG	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	250, 472
Bpu10I	CCTNAGC	1 cut(s)	438
BsaBI	GATNNNNATC	2 cut(s)	279, 333
BsaJI	CCNNGG	1 cut(s)	128
Bse8I	GATNNNNATC	2 cut(s)	279, 333
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	3 cut(s)	49, 124, 265
BseJI	GATNNNNATC	2 cut(s)	279, 333
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	19, 421
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
BspACI	CCGC	2 cut(s)	141, 453
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	4 cut(s)	114, 329, 398, 405
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	49, 124, 265
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	6 cut(s)	109, 153, 280, 337, 393, 400
BstMBI	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	19, 421
BtsCI	GGATG	3 cut(s)	49, 124, 265
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	443, 474
CviAII	CATG	2 cut(s)	103, 326
CviJI	RGCY	7 cut(s)	10, 123, 169, 179, 223, 368, 380
CviKI_1	RGCY	7 cut(s)	10, 123, 169, 179, 223, 368, 380
CviQI	GTAC	2 cut(s)	443, 474
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	6 cut(s)	108, 152, 279, 336, 392, 399
DpnII	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
Eco130I	CCWWGG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	2 cut(s)	106, 329
FaiI	YATR	9 cut(s)	57, 59, 104, 227, 251, 266, 294, 300, 327
FatI	CATG	2 cut(s)	102, 325
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	8, 435
FokI	GGATG	3 cut(s)	56, 131, 272
Fsp4HI	GCNGC	2 cut(s)	8, 435
FspBI	CTAG	2 cut(s)	159, 339
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	8, 435
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	106, 329
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	378
Hpy166II	GTNNAC	3 cut(s)	23, 97, 425
Hpy188I	TCNGA	2 cut(s)	33, 118
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	3 cut(s)	23, 97, 425
HpyAV	CCTTC	2 cut(s)	76, 483
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	374, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	106, 329
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	155, 228, 229, 269, 384, 404, 447, 471, 474
Lsp1109I	GCAGC	2 cut(s)	19, 421
LweI	GCATC	2 cut(s)	250, 472
MaeI	CTAG	2 cut(s)	159, 339
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	6 cut(s)	108, 152, 279, 336, 392, 399
MboI	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
MluCI	AATT	3 cut(s)	295, 402, 413
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	159, 340, 400, 403
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	3 cut(s)	254, 312, 517
MslI	CAYNNNNRTG	2 cut(s)	60, 285
MspR9I	CCNGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
NlaIII	CATG	2 cut(s)	106, 329
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	154
PagI	TCATGA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	9, 436
PshBI	ATTAAT	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	494
RsaI	GTAC	2 cut(s)	444, 475
RsaNI	GTAC	2 cut(s)	443, 474
RseI	CAYNNNNRTG	2 cut(s)	60, 285
SaqAI	TTAA	3 cut(s)	254, 312, 517
SatI	GCNGC	2 cut(s)	8, 435
Sau3AI	GATC	6 cut(s)	106, 150, 277, 334, 390, 397
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	6 cut(s)	12, 28, 370, 382, 444, 494
SfaNI	GCATC	2 cut(s)	250, 472
SmiMI	CAYNNNNRTG	2 cut(s)	60, 285
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	3 cut(s)	295, 402, 413
SsiI	CCGC	2 cut(s)	141, 453
SspMI	CTAG	2 cut(s)	159, 339
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	128
TaiI	ACGT	1 cut(s)	28
TasI	AATT	3 cut(s)	295, 402, 413
Tru1I	TTAA	3 cut(s)	254, 312, 517
Tru9I	TTAA	3 cut(s)	254, 312, 517
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	7, 434
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	17, 74
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	159, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.