Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

33527018 .. 33531021

Gene Structure 4004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG168500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGAACCGATCCACATCCCCACCGCCACTCTCACCGGGGAAACGTACCCGCAATATGCGTTTGACGGATTGTTTCCAGGACAGCGAGACGGGTTGTTTCTTGGACAGGGAGATCTCGGTACAAGGTAGCAACACTGGTTTCTCTTCAGAAAAACTTTTCAAATGGGCTTTTCGCAAGAGAGAAGGACCAAAGGCAGCCCTAAAGGGTGAAGAAAAACCAATGGCTGCCGAAGGACCAGAGGCAGCTTCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCCCTAAAGAAATGGCAAAGGCTGCTGATTATAGTTTGGAGGACCTCCTCGACCAAGGTCTCACATTTTGTACAATTTGTGGTCAGGAGAATCACCGCGCTTACAGTTGTGTGAAATACTTTGAGGAATATAAATGTCCATATGGAAGTACATTTGTTCCGCCAGGCATTAACCAATATGACAAGAAGCCGTCTGATATCTGGACCGAATGGGATGAAGAGTATTTTAGAATTTTGTGCATCGATGATTATGTCCCAGAGGGCTTTGAGTACCTGTGTAAAGTCAGTGAAATAAAAAACATTCATAGAGCTATGATTCAGCAGCACAACGAGATCGAACAATTAGTTGGTGCTGGAATTGAACCCAAATGTGAGGTAAGAAAGACTAGTGGCGAGCATGACCACCAGACGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.19

Weight (kDa)

5.54

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	399
AciI	CCGC	4 cut(s)	26, 52, 397, 461
AclWI	GGATC	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	5 cut(s)	49, 123, 373, 451, 572
AgsI	TTSAA	3 cut(s)	163, 252, 662
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	78, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	3 cut(s)	248, 286, 611
AluI	AGCT	3 cut(s)	248, 286, 611
Alw26I	GTCTC	2 cut(s)	83, 365
AlwI	GGATC	1 cut(s)	6
ApeKI	GCWGC	6 cut(s)	197, 227, 245, 257, 323, 622
ApoI	RAATTY	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	188, 236, 343, 504
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	27, 221, 386
AvaII	GGWCC	4 cut(s)	188, 236, 343, 504
BbvI	GCAGC	6 cut(s)	209, 214, 244, 257, 310, 634
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	80, 465
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	83, 365
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	1 cut(s)	687
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	6 cut(s)	198, 228, 246, 258, 324, 623
BlsI	GCNGC	6 cut(s)	199, 229, 247, 259, 325, 624
Bme1390I	CCNGG	3 cut(s)	39, 80, 465
Bme18I	GGWCC	4 cut(s)	188, 236, 343, 504
BmgT120I	GGNCC	4 cut(s)	188, 236, 343, 504
BmrFI	CCNGG	3 cut(s)	39, 80, 465
BmsI	GCATC	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	38, 355
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	80, 465
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	38, 355
BseGI	GGATG	2 cut(s)	17, 520
BseJI	GATNNNNATC	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	6 cut(s)	209, 214, 244, 257, 310, 634
Bsh1236I	CGCG	1 cut(s)	399
BshVI	ATCGAT	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	539
BsmAI	GTCTC	2 cut(s)	83, 365
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	365
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	11, 114, 633
BspACI	CCGC	4 cut(s)	26, 52, 397, 461
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	399
BspPI	GGATC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	38, 355
BssMI	GATC	3 cut(s)	11, 114, 633
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	80, 465
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	151, 513
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	17, 520
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	3 cut(s)	14, 117, 636
BstMAI	GTCTC	2 cut(s)	83, 365
BstMBI	GATC	3 cut(s)	11, 114, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 323
BstNI	CCWGG	2 cut(s)	80, 465
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	37, 78, 463
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	6 cut(s)	209, 214, 244, 257, 310, 634
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	543
BsuTUI	ATCGAT	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	17, 520
BtsIMutI	CAGTG	2 cut(s)	135, 592
Cac8I	GCNNGC	1 cut(s)	695
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	4 cut(s)	188, 236, 343, 504
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	5 cut(s)	48, 122, 372, 450, 571
CviAII	CATG	1 cut(s)	698
CviQI	GTAC	5 cut(s)	48, 122, 372, 450, 571
DpnI	GATC	3 cut(s)	13, 116, 635
DpnII	GATC	3 cut(s)	11, 114, 633
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	151, 513
EarI	CTCTTC	2 cut(s)	151, 513
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	4 cut(s)	188, 236, 343, 504
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	78, 463
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	701
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	1 cut(s)	697
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	6 cut(s)	198, 228, 246, 258, 324, 623
FokI	GGATG	2 cut(s)	4, 527
Fsp4HI	GCNGC	6 cut(s)	198, 228, 246, 258, 324, 623
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	6 cut(s)	198, 228, 246, 258, 324, 623
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	701
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	391, 616
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	3 cut(s)	27, 221, 386
Hpy188I	TCNGA	2 cut(s)	151, 496
Hpy188III	TCNNGA	2 cut(s)	386, 502
HpyAV	CCTTC	2 cut(s)	179, 227
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 323
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	701
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	11, 114, 633
Lsp1109I	GCAGC	6 cut(s)	209, 214, 244, 257, 310, 634
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	13, 116, 635
MboI	GATC	3 cut(s)	11, 114, 633
MboII	GAAGA	3 cut(s)	138, 224, 530
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	4 cut(s)	375, 531, 641, 657
MnlI	CCTC	8 cut(s)	235, 306, 334, 356, 359, 418, 553, 667
MseI	TTAA	2 cut(s)	276, 471
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	39, 80, 465
MssI	GTTTAAAC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	80, 465
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	254, 323
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	3 cut(s)	11, 114, 633
NlaIII	CATG	1 cut(s)	701
PfeI	GAWTC	2 cut(s)	391, 616
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	6 cut(s)	199, 229, 247, 259, 325, 624
PmeI	GTTTAAAC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	78, 463
PspGI	CCWGG	2 cut(s)	78, 463
PspPI	GGNCC	4 cut(s)	188, 236, 343, 504
PspPPI	RGGWCCY	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	5 cut(s)	49, 123, 373, 451, 572
RsaNI	GTAC	5 cut(s)	48, 122, 372, 450, 571
SaqAI	TTAA	2 cut(s)	276, 471
SatI	GCNGC	6 cut(s)	198, 228, 246, 258, 324, 623
Sau3AI	GATC	3 cut(s)	11, 114, 633
Sau96I	GGNCC	4 cut(s)	188, 236, 343, 504
ScrFI	CCNGG	3 cut(s)	39, 80, 465
SfaNI	GCATC	1 cut(s)	549
SinI	GGWCC	4 cut(s)	188, 236, 343, 504
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	4 cut(s)	375, 531, 641, 657
SsiI	CCGC	4 cut(s)	26, 52, 397, 461
SspMI	CTAG	1 cut(s)	687
StyD4I	CCNGG	3 cut(s)	37, 78, 463
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	351, 543, 636
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	4 cut(s)	375, 531, 641, 657
TatI	WGTACW	2 cut(s)	371, 449
TfiI	GAWTC	2 cut(s)	391, 616
Tru1I	TTAA	2 cut(s)	276, 471
Tru9I	TTAA	2 cut(s)	276, 471
TscAI	CASTG	2 cut(s)	142, 592
TseI	GCWGC	6 cut(s)	197, 227, 245, 257, 323, 622
TspDTI	ATGAA	2 cut(s)	531, 593
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	142, 592
VpaK11BI	GGWCC	4 cut(s)	188, 236, 343, 504
XapI	RAATTY	1 cut(s)	531
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.