Rh7DG135400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008829
Physical Location & Seq
Forward (+)
11474720 .. 11478166
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG135400.1

Sequence Viewer

Length: 345 bp
ATGAGCAGTGGCAGTAGCAGTAGCAGTGGCTTGATCATAACTGTTTCCAGGGCTCATGGCGAAGTTGATGGTGTTGCATTAGTTAGCGTCTTGGAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAAAGGTTGCCGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAATCAAAGGTTGCCGAAGGACCAGAGGCAAAGGAACCTCTTACCTCTAAAGAAGAGGCAAAGGCCGCTGATTACAGTTTGGATGACCTCCTCGATGAAGGTCTCGAATTTTGTACGATTTGTGGTCAGGAGGACCACTGGGTATACTCTTGTGAGAAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.0

Weight (kDa)

4.4

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 113, 161
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 104, 152, 200, 313
AsuHPI GGTGA 2 cut(s) 137, 185
AvaII GGWCC 4 cut(s) 104, 152, 200, 313
BanII GRGCYC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 125, 173
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 49
BclI TGATCA 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 287
BisI GCNGC 3 cut(s) 114, 162, 246
BlsI GCNGC 3 cut(s) 115, 163, 247
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 4 cut(s) 104, 152, 200, 313
BmgT120I GGNCC 4 cut(s) 104, 152, 200, 313
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 125, 173
BshFI GGCC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 33
BssNAI GTATAC 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 43, 257
Bst6I CTCTTC 1 cut(s) 228
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 125, 173
BstZ17I GTATAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 13, 31
BtsIMutI CAGTG 3 cut(s) 13, 31, 316
Cfr13I GGNCC 4 cut(s) 104, 152, 200, 313
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 56
CviJI RGCY 5 cut(s) 30, 53, 116, 164, 245
CviKI_1 RGCY 5 cut(s) 30, 53, 116, 164, 245
CviQI GTAC 1 cut(s) 294
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 4 cut(s) 104, 152, 200, 313
EcoRII CCWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 38, 57, 325
FatI CATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 114, 162, 246
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 114, 162, 246
GluI GCNGC 3 cut(s) 114, 162, 246
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 59
HphI GGTGA 2 cut(s) 137, 185
Hpy166II GTNNAC 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 284, 308
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 4 cut(s) 95, 143, 191, 272
HpyCH4III ACNGT 2 cut(s) 43, 257
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 7 cut(s) 34, 61, 120, 168, 216, 293, 304
Lsp1109I GCAGC 2 cut(s) 125, 173
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 140, 188, 245
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 33
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 216
PkrI GCNGC 3 cut(s) 115, 163, 247
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 104, 152, 200, 313
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SatI GCNGC 3 cut(s) 114, 162, 246
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 4 cut(s) 104, 152, 200, 313
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 55
SetI ASST 6 cut(s) 144, 192, 220, 227, 270, 283
SinI GGWCC 4 cut(s) 104, 152, 200, 313
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 43, 257
TaqI TCGA 2 cut(s) 273, 285
TasI AATT 1 cut(s) 287
TauI GCSGC 1 cut(s) 248
TscAI CASTG 3 cut(s) 13, 31, 323
TseI GCWGC 2 cut(s) 113, 161
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 3 cut(s) 13, 31, 323
VpaK11BI GGWCC 4 cut(s) 104, 152, 200, 313
XapI RAATTY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.