Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003043.1

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Forward (+)

36546 .. 38039

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003043.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgtgcaaccccttgaggagttatttcgtgagtcgaaagatgaagaagcggctggcccacatcaaatatgggtttgcagaattggtgaagatacaggtagaagaaggagacgatctagatgatgacaatgagacggttctgaaggacgttctctttggtgagtcgagagtcccactactactaaagcttccgcaccaaattccagcagtggtatcaaagccacaaattctaacagagagtcgtatcggattggatcaggaggcagagtcgattgagcgcttgctctttggtgagtccagaactggatttaggtgtgttggagtcgtcggcattgctggtgtgggcaagacggcacttgtggaaacggttttgaataatactagtcctctgattttgacgttcattcttgacaagttgggccatgatgacaaagccaaccagacgctgagtttcctcttgcaaaaaatgaagcagcttttgttgggtaaacgttatctgattgtgttggatggtgtttggcatatgaatgccttctattgctctttagggaataacaatgtcaacggcatggatcgcctatcggatggcttgccttgggatagtggcggtgctgtgatcgtcactagtaggaggctggaagtggctcaacaaatggtgggcgcagataacttgattattcctgtcaagcctatggacaaacaaaactgctggtgtatattaatggatgctatactgcgtgatgatcatcagggtgtctataattatactaatgatattaaagacaataatcatgattttgatcctagtagagaggaaaagtttagcgaacaagctcctgcaaaagctttgaataggatcaaggatcaaattgaggaggaatttcagggtctaccatttgctgctaaggtactcgcaaccgcctttcctggacacattcgtacaagagatgcaggaaggttcccaatagagtttgagtttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat NB-ARC

Protein Analysis

327

Amino Acids

36.76

Weight (kDa)

5.72

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	889
AciI	CCGC	4 cut(s)	49, 191, 606, 918
AclI	AACGTT	1 cut(s)	490
AclWI	GGATC	5 cut(s)	261, 579, 794, 863, 870
AcsI	RAATTY	3 cut(s)	198, 225, 878
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	909, 940
AfeI	AGCGCT	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	373, 850
AhlI	ACTAGT	2 cut(s)	380, 623
AjnI	CCWGG	1 cut(s)	925
AluBI	AGCT	4 cut(s)	187, 475, 833, 845
AluI	AGCT	4 cut(s)	187, 475, 833, 845
Alw26I	GTCTC	2 cut(s)	102, 125
AlwI	GGATC	5 cut(s)	261, 579, 794, 863, 870
AlwNI	CAGNNNCTG	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	2 cut(s)	54, 418
ApeKI	GCWGC	2 cut(s)	472, 899
ApoI	RAATTY	3 cut(s)	198, 225, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AseI	ATTAAT	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	530
AspLEI	GCGC	2 cut(s)	279, 662
AspS9I	GGNCC	2 cut(s)	55, 418
AsuHPI	GGTGA	3 cut(s)	97, 170, 302
BbvI	GCAGC	2 cut(s)	484, 886
BccI	CCATC	2 cut(s)	503, 578
BceAI	ACGGC	2 cut(s)	366, 580
BciT130I	CCWGG	1 cut(s)	927
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	102, 125
BcuI	ACTAGT	2 cut(s)	380, 623
BfaI	CTAG	4 cut(s)	116, 381, 624, 804
BfoI	RGCGCY	1 cut(s)	280
BisI	GCNGC	3 cut(s)	50, 473, 900
BlsI	GCNGC	3 cut(s)	51, 474, 901
Bme1390I	CCNGG	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	55, 418
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	715, 937
Bpu10I	CCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	34
BsaBI	GATNNNNATC	2 cut(s)	744, 798
BsaJI	CCNNGG	1 cut(s)	593
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	2 cut(s)	744, 798
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	3 cut(s)	514, 589, 730
BseJI	GATNNNNATC	2 cut(s)	744, 798
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	31, 887
BseXI	GCAGC	2 cut(s)	484, 886
BshFI	GGCC	2 cut(s)	56, 420
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	102, 125
BsmBI	CGTCTC	2 cut(s)	102, 125
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	56, 420
Bsp143I	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
BspACI	CCGC	4 cut(s)	49, 191, 606, 918
BspANI	GGCC	2 cut(s)	56, 420
BspCNI	CTCAG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	1 cut(s)	959
BspPI	GGATC	5 cut(s)	261, 579, 794, 863, 870
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	136, 367
BstC8I	GCNNGC	3 cut(s)	54, 281, 590
BstDEI	CTNAG	2 cut(s)	446, 903
BstF5I	GGATG	3 cut(s)	514, 589, 730
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	279, 662
BstKTI	GATC	8 cut(s)	115, 256, 574, 618, 745, 802, 858, 865
BstMAI	GTCTC	2 cut(s)	102, 125
BstMBI	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	484, 886
BsuRI	GGCC	2 cut(s)	56, 420
BtsCI	GGATG	3 cut(s)	514, 589, 730
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	54, 281, 590
CaiI	CAGNNNCTG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	2 cut(s)	279, 662
Cfr13I	GGNCC	2 cut(s)	55, 418
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	908, 939
CviAII	CATG	3 cut(s)	422, 568, 791
CviQI	GTAC	2 cut(s)	908, 939
DdeI	CTNAG	2 cut(s)	446, 903
DpnI	GATC	8 cut(s)	114, 255, 573, 617, 744, 801, 857, 864
DpnII	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
Eco130I	CCWWGG	1 cut(s)	593
Eco47III	AGCGCT	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
Esp3I	CGTCTC	2 cut(s)	102, 125
FaeI	CATG	3 cut(s)	425, 571, 794
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	421, 567, 790
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	50, 473, 900
FokI	GGATG	3 cut(s)	521, 596, 737
Fsp4HI	GCNGC	3 cut(s)	50, 473, 900
FspBI	CTAG	4 cut(s)	116, 381, 624, 804
GlaI	GCGC	2 cut(s)	278, 661
GluI	GCNGC	3 cut(s)	50, 473, 900
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	56, 420
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	2 cut(s)	279, 662
Hin1II	CATG	3 cut(s)	425, 571, 794
Hin6I	GCGC	2 cut(s)	277, 660
HinP1I	GCGC	2 cut(s)	277, 660
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	185, 843
HinfI	GANTC	7 cut(s)	31, 161, 168, 238, 266, 293, 321
HphI	GGTGA	3 cut(s)	97, 170, 302
Hpy166II	GTNNAC	3 cut(s)	488, 562, 890
Hpy188I	TCNGA	5 cut(s)	141, 248, 390, 498, 583
Hpy188III	TCNNGA	7 cut(s)	28, 116, 165, 257, 297, 407, 791
Hpy8I	GTNNAC	3 cut(s)	488, 562, 890
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	98, 136, 541, 948
HpyCH4III	ACNGT	2 cut(s)	136, 367
HpyCH4IV	ACGT	3 cut(s)	147, 398, 490
HpyCH4V	TGCA	5 cut(s)	6, 77, 460, 839, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpyF3I	CTNAG	2 cut(s)	446, 903
HpySE526I	ACGT	3 cut(s)	147, 398, 490
Hsp92II	CATG	3 cut(s)	425, 571, 794
HspAI	GCGC	2 cut(s)	277, 660
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	2 cut(s)	484, 886
LweI	GCATC	2 cut(s)	715, 937
MaeI	CTAG	4 cut(s)	116, 381, 624, 804
MaeII	ACGT	3 cut(s)	147, 398, 490
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	8 cut(s)	114, 255, 573, 617, 744, 801, 857, 864
MboI	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
MboII	GAAGA	3 cut(s)	55, 100, 113
MluCI	AATT	6 cut(s)	80, 198, 225, 760, 867, 878
MlyI	GAGTC	7 cut(s)	40, 170, 177, 247, 275, 302, 330
MmeI	TCCRAC	2 cut(s)	298, 486
MnlI	CCTC	8 cut(s)	9, 253, 396, 464, 624, 805, 865, 868
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	3 cut(s)	719, 777, 982
MslI	CAYNNNNRTG	2 cut(s)	525, 750
MspR9I	CCNGG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	1 cut(s)	573
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
NlaIII	CATG	3 cut(s)	425, 571, 794
NlaIV	GGNNCC	1 cut(s)	959
NmuCI	GTSAC	1 cut(s)	619
PagI	TCATGA	1 cut(s)	790
PctI	GAATGC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	925
PkrI	GCNGC	3 cut(s)	51, 474, 901
PleI	GAGTC	7 cut(s)	39, 169, 176, 246, 274, 301, 329
PpsI	GAGTC	7 cut(s)	39, 169, 176, 246, 274, 301, 329
PshBI	ATTAAT	1 cut(s)	719
Psp1406I	AACGTT	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	2 cut(s)	55, 418
PstNI	CAGNNNCTG	1 cut(s)	445
RsaI	GTAC	2 cut(s)	909, 940
RsaNI	GTAC	2 cut(s)	908, 939
RseI	CAYNNNNRTG	2 cut(s)	525, 750
SaqAI	TTAA	3 cut(s)	719, 777, 982
SatI	GCNGC	3 cut(s)	50, 473, 900
Sau3AI	GATC	8 cut(s)	112, 253, 571, 615, 742, 799, 855, 862
Sau96I	GGNCC	2 cut(s)	55, 418
SchI	GAGTC	7 cut(s)	40, 170, 177, 247, 275, 302, 330
ScrFI	CCNGG	1 cut(s)	927
SfaNI	GCATC	2 cut(s)	715, 937
SmiMI	CAYNNNNRTG	2 cut(s)	525, 750
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SpeI	ACTAGT	2 cut(s)	380, 623
Sse9I	AATT	6 cut(s)	80, 198, 225, 760, 867, 878
SsiI	CCGC	4 cut(s)	49, 191, 606, 918
SspMI	CTAG	4 cut(s)	116, 381, 624, 804
StyD4I	CCNGG	1 cut(s)	925
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	136, 367
TaiI	ACGT	3 cut(s)	150, 401, 493
TaqI	TCGA	3 cut(s)	34, 164, 269
TasI	AATT	6 cut(s)	80, 198, 225, 760, 867, 878
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	719, 777, 982
Tru9I	TTAA	3 cut(s)	719, 777, 982
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	2 cut(s)	472, 899
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	56, 391, 482, 539
TspRI	CASTG	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	719
XapI	RAATTY	3 cut(s)	198, 225, 878
XbaI	TCTAGA	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	4 cut(s)	116, 381, 624, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.