Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

33596943 .. 33600193

Gene Structure 3251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTGCCGAAGGACCAGAGGCAGCTTCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCCCTAAAGAAATGGCAAAGGCTGCTGATTATAGTTTGGAGGACCTCCTCGACCAAGGTCTCACATTTTGTACAATTTGTGGTCAGGAGAACCACCGCGCTTACAGTTGTGTGAAATACTTTGAGGAATATAAATGTCCATATGGAAGTACATTTGTTCCGCCAGGCATTAACCAATATGACAAGAAGCCGTCTGATATCTGGACCGAATGGGATGAAGAGTATTTTAGAATTTTGTGCATCGATGATTATGTCCCAGAGGGCTTTGAGTACCTGTGTAAAGTCAGTGAAATAAAAAACATTCATAGAGCTATGATTCAGCAGCACAACGAGATCGAACTATTAGTTGGTGCTGGAATTGAACCCAAATGTGAGGTAAGAAAGACTAGTGGCGAGCATGACCACCAGACGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.83

Weight (kDa)

4.97

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	175, 239
AcsI	RAATTY	1 cut(s)	309
AfaI	GTAC	3 cut(s)	151, 229, 350
AgsI	TTSAA	2 cut(s)	30, 440
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	3 cut(s)	26, 64, 389
AluI	AGCT	3 cut(s)	26, 64, 389
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	5 cut(s)	5, 23, 35, 101, 400
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	14, 121, 282
AvaII	GGWCC	3 cut(s)	14, 121, 282
BbvI	GCAGC	4 cut(s)	22, 35, 88, 412
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	5 cut(s)	6, 24, 36, 102, 401
BlsI	GCNGC	5 cut(s)	7, 25, 37, 103, 402
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	3 cut(s)	14, 121, 282
BmgT120I	GGNCC	3 cut(s)	14, 121, 282
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	22, 35, 88, 412
Bsh1236I	CGCG	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	175, 239
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 101
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	4 cut(s)	22, 35, 88, 412
Bsu15I	ATCGAT	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	473
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	3 cut(s)	14, 121, 282
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	150, 228, 349
CviAII	CATG	1 cut(s)	476
CviJI	RGCY	8 cut(s)	5, 26, 35, 64, 101, 268, 342, 389
CviKI_1	RGCY	8 cut(s)	5, 26, 35, 64, 101, 268, 342, 389
CviQI	GTAC	3 cut(s)	150, 228, 349
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraI	TTTAAA	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	14, 121, 282
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	479
FaiI	YATR	9 cut(s)	111, 210, 220, 222, 258, 330, 384, 392, 477
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	6, 24, 36, 102, 401
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	5 cut(s)	6, 24, 36, 102, 401
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	6, 24, 36, 102, 401
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	164, 280
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 101
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	24, 30, 149, 228, 255, 265, 348, 365, 417
Lsp1109I	GCAGC	4 cut(s)	22, 35, 88, 412
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	1 cut(s)	308
MluCI	AATT	3 cut(s)	153, 309, 435
MnlI	CCTC	8 cut(s)	13, 84, 112, 134, 137, 196, 331, 445
MseI	TTAA	2 cut(s)	54, 249
MspR9I	CCNGG	1 cut(s)	243
MssI	GTTTAAAC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	32, 101
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	5 cut(s)	7, 25, 37, 103, 402
PmeI	GTTTAAAC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	14, 121, 282
PspPPI	RGGWCCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	151, 229, 350
RsaNI	GTAC	3 cut(s)	150, 228, 349
SaqAI	TTAA	2 cut(s)	54, 249
SatI	GCNGC	5 cut(s)	6, 24, 36, 102, 401
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	3 cut(s)	14, 121, 282
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	8 cut(s)	28, 66, 76, 126, 139, 354, 391, 456
SfaNI	GCATC	1 cut(s)	327
SinI	GGWCC	3 cut(s)	14, 121, 282
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	3 cut(s)	153, 309, 435
SsiI	CCGC	2 cut(s)	175, 239
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	129, 321, 414
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	153, 309, 435
TatI	WGTACW	2 cut(s)	149, 227
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	54, 249
Tru9I	TTAA	2 cut(s)	54, 249
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	5 cut(s)	5, 23, 35, 101, 400
TspDTI	ATGAA	2 cut(s)	309, 371
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	3 cut(s)	14, 121, 282
XapI	RAATTY	1 cut(s)	309
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.