Rh7CG385700

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008829
Physical Location & Seq
Forward (+)
48757665 .. 48763850
6186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG385700.1

Sequence Viewer

Length: 936 bp
ATGAGACAGGCAGTAGCAGCACCAACGGCAACAATAGCAGCAACTATTTTGGGAGGAGGAGCGGCAGGTCAGTTTGGTGACAACACGTACACTAAGGTGTTTGTTGGAGGACTGGCCACGTACACTAAGGTGTTTGTTGGAGGACTGGCTTGGAAGACCCAGGAGACCCTGAATCTTGAGCAGTTTGGCGACATCTTGGAGGCTGTTGTCATCATGGGCAGATCTAAGGGCTATGGATTTATGCAACCGATCCACATCCCCACCGCCACTCTCACCGGCGAAACGTATCCGCATCTATATGCGTGTGACGGGTTATTTCTCGGACAGCGAGATCTCGTACAAGGTAGAAACACTGGTTTCTCTTCAGACAAACCTATCAAAAGTGATTCTCTTCGCAAGGCAAAAGGACCAGAGGCAGCCCTGAAGGGTGAAGAAAAACTAATGGCTGCCAAAGGACCAGAGGCAGCTCCAAAGGCTGCTGCTTACTATTGGTTTAAACTGAAGCTTGGAGAACCTCTTACCTCTAAAGAAAAGGCAAAGGCTGCTGATTATAGTTTGGAGGACCTCCTCGACGAAGGTCTCACATTTTGTACAATTTGTGGTCTGGAGAACCACCGCGCTTACGGTTGTGTGAAATACTATGAGGAATATAAATGTCCATATGGGAGTACATTTGTTCCGCCAGGCATTAACAAATATGACAAGAAGCCGTCTGATATCTGGACTGACTTGGATGAAGAGTATTTTAGAATTTTGTGCATCGACGATTATGTCCCAGAGGGCTTTGATTACCTGCGTAAAGTCAGTGAAATAAAAAACATTCATAGAGTTATGATTCAGCAGCACAATGAGATCGAGGAATTAGTTGGTGCTGGAATCGAACCCAAATGTGGGGTAAGAAAGACTAGTGGTGAGTATGACCACCAGACGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006974 GO:0006977 GO:0006978 GO:0007049 GO:0007050 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008285 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0023052 GO:0030330 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031570 GO:0031571 GO:0033554 GO:0035556 GO:0042127 GO:0042770 GO:0042772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045786 GO:0045787 GO:0045930 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070935 GO:0071156 GO:0071158 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0097159 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902369 GO:1902373 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903311 GO:1903312 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

311

Amino Acids

34.35

Weight (kDa)

5.78

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 56, 801
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 618
AciI CCGC 5 cut(s) 62, 264, 290, 616, 680
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 3 cut(s) 348, 443, 521
AfaI GTAC 5 cut(s) 89, 122, 339, 592, 670
AfiI CCNNNNNNNGG 2 cut(s) 890, 891
AflIII ACRYGT 1 cut(s) 84
AhlI ACTAGT 1 cut(s) 905
AjnI CCWGG 2 cut(s) 159, 682
AleI CACNNNNGTG 2 cut(s) 95, 128
AluBI AGCT 2 cut(s) 467, 505
AluI AGCT 2 cut(s) 467, 505
Alw26I GTCTC 2 cut(s) 158, 584
AlwI GGATC 1 cut(s) 244
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 9 cut(s) 17, 38, 416, 446, 464, 476, 479, 542, 841
ApoI RAATTY 1 cut(s) 750
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 3 cut(s) 407, 455, 562
AsuHPI GGTGA 4 cut(s) 89, 265, 440, 923
AvaII GGWCC 3 cut(s) 407, 455, 562
BalI TGGCCA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 9 cut(s) 29, 50, 428, 433, 463, 466, 476, 529, 853
BceAI ACGGC 2 cut(s) 42, 694
BciT130I CCWGG 2 cut(s) 161, 684
BciVI GTATCC 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 158, 584
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 1 cut(s) 906
BfuAI ACCTGC 2 cut(s) 56, 801
BfuI GTATCC 1 cut(s) 297
BglII AGATCT 2 cut(s) 221, 331
Bme1390I CCNGG 2 cut(s) 161, 684
Bme18I GGWCC 3 cut(s) 407, 455, 562
BmgT120I GGNCC 3 cut(s) 407, 455, 562
BmrFI CCNGG 2 cut(s) 161, 684
BmsI GCATC 2 cut(s) 301, 768
BoxI GACNNNNGTC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 197
BsaAI YACGTR 2 cut(s) 87, 120
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 2 cut(s) 158, 584
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 890, 891
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 3 cut(s) 117, 150, 358
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 2 cut(s) 161, 684
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 255, 739
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 890, 891
BseNI ACTGG 3 cut(s) 117, 150, 358
BseRI GAGGAG 3 cut(s) 69, 72, 557
BseXI GCAGC 9 cut(s) 29, 50, 428, 433, 463, 466, 476, 529, 853
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 890, 891
BsmAI GTCTC 2 cut(s) 158, 584
BsmFI GGGAC 1 cut(s) 758
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 2 cut(s) 158, 584
Bsp1407I TGTACA 1 cut(s) 590
Bsp143I GATC 4 cut(s) 221, 249, 331, 852
BspACI CCGC 5 cut(s) 62, 264, 290, 616, 680
BspANI GGCC 1 cut(s) 116
BspFNI CGCG 1 cut(s) 618
BspMI ACCTGC 2 cut(s) 56, 801
BspPI GGATC 1 cut(s) 244
BspTNI GGTCTC 2 cut(s) 158, 584
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 590
BsrI ACTGG 3 cut(s) 117, 150, 358
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 221, 249, 331, 852
Bst2UI CCWGG 2 cut(s) 161, 684
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 3 cut(s) 367, 396, 732
BstAPI GCANNNNNTGC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 590
BstBAI YACGTR 2 cut(s) 87, 120
BstDEI CTNAG 3 cut(s) 93, 126, 225
BstF5I GGATG 2 cut(s) 255, 739
BstFNI CGCG 1 cut(s) 618
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 4 cut(s) 224, 252, 334, 855
BstMAI GTCTC 2 cut(s) 158, 584
BstMBI GATC 4 cut(s) 221, 249, 331, 852
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 473, 542
BstNI CCWGG 2 cut(s) 161, 684
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 159, 682
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 9 cut(s) 29, 50, 428, 433, 463, 466, 476, 529, 853
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 221, 331
BstYI RGATCY 2 cut(s) 221, 331
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 2 cut(s) 255, 739
BtsIMutI CAGTG 2 cut(s) 351, 811
BveI ACCTGC 2 cut(s) 56, 801
CfoI GCGC 1 cut(s) 620
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 407, 455, 562
Csp6I GTAC 5 cut(s) 88, 121, 338, 591, 669
CviAII CATG 1 cut(s) 214
CviQI GTAC 5 cut(s) 88, 121, 338, 591, 669
DdeI CTNAG 3 cut(s) 93, 126, 225
DpnI GATC 4 cut(s) 223, 251, 333, 854
DpnII GATC 4 cut(s) 221, 249, 331, 852
DraI TTTAAA 1 cut(s) 496
DrdI GACNNNNNNGTC 1 cut(s) 770
DseDI GACNNNNNNGTC 1 cut(s) 770
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 367, 396, 732
EarI CTCTTC 3 cut(s) 367, 396, 732
EciI GGCGGA 1 cut(s) 669
Eco31I GGTCTC 2 cut(s) 158, 584
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 3 cut(s) 407, 455, 562
Eco57I CTGAAG 3 cut(s) 348, 443, 521
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 159, 682
EcoRV GATATC 1 cut(s) 718
FaeI CATG 1 cut(s) 217
FaqI GGGAC 1 cut(s) 758
FatI CATG 1 cut(s) 213
FauNDI CATATG 1 cut(s) 661
FokI GGATG 2 cut(s) 242, 746
FspBI CTAG 1 cut(s) 906
GlaI GCGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 620
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 172, 386, 835, 876
HpaII CCGG 1 cut(s) 276
HphI GGTGA 4 cut(s) 89, 265, 440, 923
Hpy166II GTNNAC 2 cut(s) 90, 123
Hpy188I TCNGA 3 cut(s) 323, 367, 715
Hpy188III TCNNGA 3 cut(s) 176, 605, 721
Hpy8I GTNNAC 2 cut(s) 90, 123
Hpy99I CGWCG 2 cut(s) 575, 767
HpyAV CCTTC 2 cut(s) 418, 569
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4IV ACGT 3 cut(s) 86, 119, 284
HpyCH4V TGCA 2 cut(s) 244, 759
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 473, 542
HpyF3I CTNAG 3 cut(s) 93, 126, 225
HpySE526I ACGT 3 cut(s) 86, 119, 284
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 618
Kzo9I GATC 4 cut(s) 221, 249, 331, 852
LmnI GCTCC 2 cut(s) 59, 472
Lsp1109I GCAGC 9 cut(s) 29, 50, 428, 433, 463, 466, 476, 529, 853
LweI GCATC 2 cut(s) 301, 768
MaeI CTAG 1 cut(s) 906
MaeII ACGT 3 cut(s) 86, 119, 284
MaeIII GTNAC 2 cut(s) 77, 305
MalI GATC 4 cut(s) 223, 251, 333, 854
MbiI CCGCTC 1 cut(s) 62
MboI GATC 4 cut(s) 221, 249, 331, 852
MboII GAAGA 5 cut(s) 166, 354, 383, 443, 749
MflI RGATCY 2 cut(s) 221, 331
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 3 cut(s) 594, 750, 860
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 85, 118
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MseI TTAA 2 cut(s) 495, 690
MslI CAYNNNNRTG 3 cut(s) 95, 128, 297
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 161, 684
MssI GTTTAAAC 1 cut(s) 496
MvaI CCWGG 2 cut(s) 161, 684
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 473, 542
NdeI CATATG 1 cut(s) 661
NdeII GATC 4 cut(s) 221, 249, 331, 852
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 77, 305
OliI CACNNNNGTG 2 cut(s) 95, 128
PfeI GAWTC 4 cut(s) 172, 386, 835, 876
PmeI GTTTAAAC 1 cut(s) 496
Ppu21I YACGTR 2 cut(s) 87, 120
PpuMI RGGWCCY 1 cut(s) 562
PshAI GACNNNNGTC 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 159, 682
PspGI CCWGG 2 cut(s) 159, 682
PspPI GGNCC 3 cut(s) 407, 455, 562
PspPPI RGGWCCY 1 cut(s) 562
PsuI RGATCY 2 cut(s) 221, 331
RsaI GTAC 5 cut(s) 89, 122, 339, 592, 670
RsaNI GTAC 5 cut(s) 88, 121, 338, 591, 669
RseI CAYNNNNRTG 3 cut(s) 95, 128, 297
SaqAI TTAA 2 cut(s) 495, 690
Sau3AI GATC 4 cut(s) 221, 249, 331, 852
Sau96I GGNCC 3 cut(s) 407, 455, 562
ScrFI CCNGG 2 cut(s) 161, 684
SfaNI GCATC 2 cut(s) 301, 768
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 3 cut(s) 407, 455, 562
SmiMI CAYNNNNRTG 3 cut(s) 95, 128, 297
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 3 cut(s) 594, 750, 860
SsiI CCGC 5 cut(s) 62, 264, 290, 616, 680
SspMI CTAG 1 cut(s) 906
StyD4I CCNGG 2 cut(s) 159, 682
TaaI ACNGT 1 cut(s) 626
TaiI ACGT 3 cut(s) 89, 122, 287
TaqI TCGA 4 cut(s) 570, 762, 855, 879
TasI AATT 3 cut(s) 594, 750, 860
TatI WGTACW 2 cut(s) 590, 668
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 4 cut(s) 172, 386, 835, 876
Tru1I TTAA 2 cut(s) 495, 690
Tru9I TTAA 2 cut(s) 495, 690
TscAI CASTG 2 cut(s) 358, 811
TseFI GTSAC 2 cut(s) 77, 305
TseI GCWGC 9 cut(s) 17, 38, 416, 446, 464, 476, 479, 542, 841
Tsp45I GTSAC 2 cut(s) 77, 305
TspDTI ATGAA 2 cut(s) 750, 812
TspRI CASTG 2 cut(s) 358, 811
VpaK11BI GGWCC 3 cut(s) 407, 455, 562
XapI RAATTY 1 cut(s) 750
XspI CTAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.