Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

71476755 .. 71478562

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG493400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTCAAGTGCTGTTCTCCTAGCAAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAATCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAAAGGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCAAATTTTGTACAATTTGTGGTCAGGAGGACCACTGGGTTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCGCCACGCATTAACCAACATGACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGCATTTGGATCTTTTGTGCATCAAAGATTATGTCCCAGAGGGCTTTGAGTACCTGCATACAGTCAGTGAAATAAAAAACATACATAGAATTATGATTCAGCAGCACAACGAGATCAAGGTTTACGTTAGCTCCGGAATCGAGCCCGATTGTGCGGTAAGAAAGACCAGTGGTGAGTCTGACGATGAAGCATGCAATGAAGGACGAGGACAAGGATGTGGATTGAAGATGGAATGGATTGCTGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

4.76

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	521
AciI	CCGC	2 cut(s)	329, 542
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	241, 440
AgsI	TTSAA	1 cut(s)	613
AluBI	AGCT	3 cut(s)	116, 154, 519
AluI	AGCT	3 cut(s)	116, 154, 519
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	521
ApeKI	GCWGC	7 cut(s)	44, 74, 113, 125, 191, 490, 629
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AspS9I	GGNCC	4 cut(s)	35, 104, 211, 259
AsuHPI	GGTGA	3 cut(s)	68, 98, 572
AvaII	GGWCC	4 cut(s)	35, 104, 211, 259
BanII	GRGCYC	1 cut(s)	534
BbvI	GCAGC	7 cut(s)	56, 86, 112, 125, 178, 502, 616
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	450
BisI	GCNGC	7 cut(s)	45, 75, 114, 126, 192, 491, 630
BlsI	GCNGC	7 cut(s)	46, 76, 115, 127, 193, 492, 631
Bme18I	GGWCC	4 cut(s)	35, 104, 211, 259
BmgT120I	GGNCC	4 cut(s)	35, 104, 211, 259
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	345, 417
BmuI	ACTGGG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bse1I	ACTGG	2 cut(s)	269, 555
Bse3DI	GCAATG	1 cut(s)	589
BseAI	TCCGGA	1 cut(s)	521
BseGI	GGATG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	269, 555
BseRI	GAGGAG	2 cut(s)	194, 206
BseXI	GCAGC	7 cut(s)	56, 86, 112, 125, 178, 502, 616
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	3 cut(s)	117, 328, 407
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	3 cut(s)	117, 328, 407
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	382, 397, 501
BspACI	CCGC	2 cut(s)	329, 542
BspCNI	CTCAG	1 cut(s)	392
BspEI	TCCGGA	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	269, 555
BssMI	GATC	3 cut(s)	382, 397, 501
Bst4CI	ACNGT	3 cut(s)	203, 275, 451
Bst6I	CTCTTC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	385, 400, 504
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	382, 397, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 191
BstNSI	RCATGY	1 cut(s)	582
BstV1I	GCAGC	7 cut(s)	56, 86, 112, 125, 178, 502, 616
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	608
BtsIMutI	CAGTG	3 cut(s)	262, 460, 562
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	580
Cfr13I	GGNCC	4 cut(s)	35, 104, 211, 259
Csp6I	GTAC	2 cut(s)	240, 439
CviAII	CATG	2 cut(s)	347, 579
CviJI	RGCY	9 cut(s)	47, 77, 116, 125, 154, 191, 432, 519, 532
CviKI_1	RGCY	9 cut(s)	47, 77, 116, 125, 154, 191, 432, 519, 532
CviQI	GTAC	2 cut(s)	240, 439
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	3 cut(s)	384, 399, 503
DpnII	GATC	3 cut(s)	382, 397, 501
DraI	TTTAAA	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	4 cut(s)	35, 104, 211, 259
Eco57I	CTGAAG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	2 cut(s)	350, 582
FaqI	GGGAC	3 cut(s)	117, 328, 407
FatI	CATG	2 cut(s)	346, 578
Fnu4HI	GCNGC	7 cut(s)	45, 75, 114, 126, 192, 491, 630
FokI	GGATG	1 cut(s)	615
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	7 cut(s)	45, 75, 114, 126, 192, 491, 630
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	7 cut(s)	45, 75, 114, 126, 192, 491, 630
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	2 cut(s)	350, 582
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	377, 484, 525, 563
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	3 cut(s)	68, 98, 572
Hpy166II	GTNNAC	2 cut(s)	271, 511
Hpy188I	TCNGA	5 cut(s)	70, 175, 364, 382, 568
Hpy188III	TCNNGA	4 cut(s)	254, 370, 386, 522
Hpy8I	GTNNAC	2 cut(s)	271, 511
HpyAV	CCTTC	3 cut(s)	26, 218, 581
HpyCH4III	ACNGT	3 cut(s)	203, 275, 451
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	3 cut(s)	408, 445, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 191
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	350, 582
Kpn2I	TCCGGA	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	382, 397, 501
LmnI	GCTCC	2 cut(s)	121, 524
Lsp1109I	GCAGC	7 cut(s)	56, 86, 112, 125, 178, 502, 616
LweI	GCATC	2 cut(s)	345, 417
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	384, 399, 503
MboI	GATC	3 cut(s)	382, 397, 501
MboII	GAAGA	4 cut(s)	71, 101, 188, 625
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	3 cut(s)	233, 243, 477
MlyI	GAGTC	2 cut(s)	371, 572
MroI	TCCGGA	1 cut(s)	521
MseI	TTAA	2 cut(s)	144, 339
MspI	CCGG	1 cut(s)	522
MssI	GTTTAAAC	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	122, 191
NdeII	GATC	3 cut(s)	382, 397, 501
NlaIII	CATG	2 cut(s)	350, 582
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	582
PaeI	GCATGC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	484, 525
PkrI	GCNGC	7 cut(s)	46, 76, 115, 127, 193, 492, 631
PleI	GAGTC	2 cut(s)	371, 571
PmeI	GTTTAAAC	1 cut(s)	145
PpsI	GAGTC	2 cut(s)	371, 571
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	4 cut(s)	35, 104, 211, 259
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	2 cut(s)	241, 440
RsaNI	GTAC	2 cut(s)	240, 439
SaqAI	TTAA	2 cut(s)	144, 339
SatI	GCNGC	7 cut(s)	45, 75, 114, 126, 192, 491, 630
Sau3AI	GATC	3 cut(s)	382, 397, 501
Sau96I	GGNCC	4 cut(s)	35, 104, 211, 259
SchI	GAGTC	2 cut(s)	371, 572
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	345, 417
SinI	GGWCC	4 cut(s)	35, 104, 211, 259
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	3 cut(s)	233, 243, 477
SsiI	CCGC	2 cut(s)	329, 542
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	203, 275, 451
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	219, 528
TasI	AATT	3 cut(s)	233, 243, 477
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	484, 525
Tru1I	TTAA	2 cut(s)	144, 339
Tru9I	TTAA	2 cut(s)	144, 339
TscAI	CASTG	3 cut(s)	269, 460, 562
TseI	GCWGC	7 cut(s)	44, 74, 113, 125, 191, 490, 629
TspDTI	ATGAA	4 cut(s)	237, 313, 588, 600
TspRI	CASTG	3 cut(s)	269, 460, 562
VpaK11BI	GGWCC	4 cut(s)	35, 104, 211, 259
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	582
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.