Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

66119521 .. 66121186

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTTATCTCTCGGACAGCGAGATCTCGGTACGAGGTGGTAACACTGGTTTCTCTTCGGAAAAAATGGTCAAGTGCTGTTCTCCTAGCAAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAGAGGCAGTCCTAAAGGGTGAAGAAAAACCAAAGGCTGCCGAAGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCAAATTTTGTACAATTTGTGGTCAGGAGGACCACTGGATTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCGCCAGGCATTAACCAACATGACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGTATTTGGATCTTTTGTGCATTGAAGATTATGTCCCAGAGGGCTTTGAGTACCTGCATACAGTCAGTGAAATAAAAAACATACATAGAATTTTGATTCAGCAGCACAACGAGATCAAGGATTACGTTAGCTCCGGAATCGAGCCCGATTGTGCGGTAAGAAAGACCAATGGTGAGTCTGACGATGAAGCATGCAATGAAGGACGAGGACAAGGATGTGGATTGAAGATGGAATGGATTGCTGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

4.54

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccIII	TCCGGA	1 cut(s)	596
AciI	CCGC	2 cut(s)	404, 617
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	308, 552
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	33, 316, 515
AgsI	TTSAA	2 cut(s)	488, 688
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	3 cut(s)	191, 229, 594
AluI	AGCT	3 cut(s)	191, 229, 594
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	596
ApeKI	GCWGC	7 cut(s)	110, 170, 188, 200, 266, 565, 704
ApoI	RAATTY	2 cut(s)	308, 552
AspS9I	GGNCC	4 cut(s)	101, 179, 286, 334
AsuHPI	GGTGA	3 cut(s)	134, 164, 647
AvaII	GGWCC	4 cut(s)	101, 179, 286, 334
BanII	GRGCYC	1 cut(s)	609
BbvI	GCAGC	7 cut(s)	122, 157, 187, 200, 253, 577, 691
BccI	CCATC	1 cut(s)	685
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	525
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	7 cut(s)	111, 171, 189, 201, 267, 566, 705
BlsI	GCNGC	7 cut(s)	112, 172, 190, 202, 268, 567, 706
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	4 cut(s)	101, 179, 286, 334
BmgT120I	GGNCC	4 cut(s)	101, 179, 286, 334
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bse1I	ACTGG	2 cut(s)	52, 344
Bse3DI	GCAATG	1 cut(s)	664
BseAI	TCCGGA	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	683
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	52, 344
BseRI	GAGGAG	2 cut(s)	269, 281
BseXI	GCAGC	7 cut(s)	122, 157, 187, 200, 253, 577, 691
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	403, 482
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	403, 482
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp13I	TCCGGA	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	24, 457, 472, 576
BspACI	CCGC	2 cut(s)	404, 617
BspCNI	CTCAG	1 cut(s)	467
BspEI	TCCGGA	1 cut(s)	596
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	664
BsrGI	TGTACA	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	52, 344
BssMI	GATC	4 cut(s)	24, 457, 472, 576
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	278, 350, 526
Bst6I	CTCTTC	2 cut(s)	61, 246
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	683
BstKTI	GATC	4 cut(s)	27, 460, 475, 579
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	24, 457, 472, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 266
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	7 cut(s)	122, 157, 187, 200, 253, 577, 691
BstX2I	RGATCY	2 cut(s)	24, 472
BstYI	RGATCY	2 cut(s)	24, 472
BtsCI	GGATG	1 cut(s)	683
BtsIMutI	CAGTG	3 cut(s)	45, 337, 535
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	655
Cfr13I	GGNCC	4 cut(s)	101, 179, 286, 334
Csp6I	GTAC	3 cut(s)	32, 315, 514
CviAII	CATG	2 cut(s)	422, 654
CviJI	RGCY	9 cut(s)	113, 170, 191, 200, 229, 266, 507, 594, 607
CviKI_1	RGCY	9 cut(s)	113, 170, 191, 200, 229, 266, 507, 594, 607
CviQI	GTAC	3 cut(s)	32, 315, 514
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	4 cut(s)	26, 459, 474, 578
DpnII	GATC	4 cut(s)	24, 457, 472, 576
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	61, 246
EarI	CTCTTC	2 cut(s)	61, 246
EciI	GGCGGA	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	4 cut(s)	101, 179, 286, 334
Eco57I	CTGAAG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	2 cut(s)	425, 657
FaqI	GGGAC	2 cut(s)	403, 482
FatI	CATG	2 cut(s)	421, 653
Fnu4HI	GCNGC	7 cut(s)	111, 171, 189, 201, 267, 566, 705
FokI	GGATG	1 cut(s)	690
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	7 cut(s)	111, 171, 189, 201, 267, 566, 705
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	7 cut(s)	111, 171, 189, 201, 267, 566, 705
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	2 cut(s)	425, 657
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	4 cut(s)	452, 559, 600, 638
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	3 cut(s)	134, 164, 647
Hpy188I	TCNGA	6 cut(s)	16, 61, 250, 439, 457, 643
Hpy188III	TCNNGA	4 cut(s)	329, 445, 461, 597
HpyAV	CCTTC	4 cut(s)	92, 170, 293, 656
HpyCH4III	ACNGT	3 cut(s)	278, 350, 526
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	483, 520, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 266
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	425, 657
Kpn2I	TCCGGA	1 cut(s)	596
Kzo9I	GATC	4 cut(s)	24, 457, 472, 576
LmnI	GCTCC	2 cut(s)	196, 599
Lsp1109I	GCAGC	7 cut(s)	122, 157, 187, 200, 253, 577, 691
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	41, 206
MalI	GATC	4 cut(s)	26, 459, 474, 578
MboI	GATC	4 cut(s)	24, 457, 472, 576
MboII	GAAGA	6 cut(s)	48, 137, 167, 263, 500, 700
MflI	RGATCY	2 cut(s)	24, 472
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	3 cut(s)	308, 318, 552
MlyI	GAGTC	2 cut(s)	446, 647
MroI	TCCGGA	1 cut(s)	596
MseI	TTAA	2 cut(s)	219, 414
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	408
MssI	GTTTAAAC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	197, 266
NdeII	GATC	4 cut(s)	24, 457, 472, 576
NlaIII	CATG	2 cut(s)	425, 657
NspI	RCATGY	1 cut(s)	657
PaeI	GCATGC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	559, 600
PkrI	GCNGC	7 cut(s)	112, 172, 190, 202, 268, 567, 706
PleI	GAGTC	2 cut(s)	446, 646
PmeI	GTTTAAAC	1 cut(s)	220
PpsI	GAGTC	2 cut(s)	446, 646
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspPI	GGNCC	4 cut(s)	101, 179, 286, 334
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	24, 472
RsaI	GTAC	3 cut(s)	33, 316, 515
RsaNI	GTAC	3 cut(s)	32, 315, 514
SaqAI	TTAA	2 cut(s)	219, 414
SatI	GCNGC	7 cut(s)	111, 171, 189, 201, 267, 566, 705
Sau3AI	GATC	4 cut(s)	24, 457, 472, 576
Sau96I	GGNCC	4 cut(s)	101, 179, 286, 334
SchI	GAGTC	2 cut(s)	446, 647
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	1 cut(s)	420
SinI	GGWCC	4 cut(s)	101, 179, 286, 334
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	657
Sse9I	AATT	3 cut(s)	308, 318, 552
SsiI	CCGC	2 cut(s)	404, 617
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	278, 350, 526
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	294, 603
TasI	AATT	3 cut(s)	308, 318, 552
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	559, 600
Tru1I	TTAA	2 cut(s)	219, 414
Tru9I	TTAA	2 cut(s)	219, 414
TscAI	CASTG	3 cut(s)	52, 344, 535
TseI	GCWGC	7 cut(s)	110, 170, 188, 200, 266, 565, 704
TspDTI	ATGAA	4 cut(s)	312, 388, 663, 675
TspRI	CASTG	3 cut(s)	52, 344, 535
VpaK11BI	GGWCC	4 cut(s)	101, 179, 286, 334
XapI	RAATTY	2 cut(s)	308, 552
XceI	RCATGY	1 cut(s)	657
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.