Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

74032281 .. 74033860

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG516800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCATCGATGGGCATGTGATGGGTTATCTCTCGGACAGCGAGATCTCGGTGGTAACACTGGTTTCTCTTCGGAAAAAATGGTCAAGTGCTGTTCTCCTAGCAAGGCAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAAAAACCAAAGGCTGCCGAAGGACCAGAGGCAGCTCCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACATCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCAAATTTTGTACAATTTGTGGTCAGGAGGACCACTGGGTTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCGCCAGGCATTAACCAACATCACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGTATTTGGATCTTTTGTGCATCGACGATTATGTCCCAGAGGGCTTTGAGTACCTGCATACAGTCAGTGAAATAAAAAACATACATAGAATTTTGATTCAGCAGCACAACGAGATCAAGGATTACGTTAGCTCCGGAATCGATCGAGCCCGATTGTGCGGTAAGAAAGACCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.58

Weight (kDa)

5.05

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	510
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	2 cut(s)	389, 606
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	293, 537
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	301, 500
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	3 cut(s)	176, 214, 579
AluI	AGCT	3 cut(s)	176, 214, 579
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	581
ApeKI	GCWGC	6 cut(s)	122, 155, 173, 185, 251, 550
ApoI	RAATTY	2 cut(s)	293, 537
AspS9I	GGNCC	4 cut(s)	113, 164, 271, 319
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	4 cut(s)	113, 164, 271, 319
BanII	GRGCYC	1 cut(s)	598
BbvI	GCAGC	6 cut(s)	134, 142, 172, 185, 238, 562
BccI	CCATC	2 cut(s)	3, 14
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	6 cut(s)	123, 156, 174, 186, 252, 551
BlsI	GCNGC	6 cut(s)	124, 157, 175, 187, 253, 552
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	4 cut(s)	113, 164, 271, 319
BmgT120I	GGNCC	4 cut(s)	113, 164, 271, 319
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	3 cut(s)	13, 405, 477
BmuI	ACTGGG	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	194
Bsa29I	ATCGAT	2 cut(s)	7, 588
BsaI	GGTCTC	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bse1I	ACTGG	2 cut(s)	64, 329
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	2 cut(s)	7, 588
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	64, 329
BseRI	GAGGAG	2 cut(s)	254, 266
BseXI	GCAGC	6 cut(s)	134, 142, 172, 185, 238, 562
Bsh1285I	CGRYCG	1 cut(s)	592
BshVI	ATCGAT	2 cut(s)	7, 588
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	388, 467
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	2 cut(s)	388, 467
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp13I	TCCGGA	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	5 cut(s)	43, 442, 457, 561, 589
BspACI	CCGC	2 cut(s)	389, 606
BspCNI	CTCAG	1 cut(s)	452
BspDI	ATCGAT	2 cut(s)	7, 588
BspEI	TCCGGA	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	64, 329
BssMI	GATC	5 cut(s)	43, 442, 457, 561, 589
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	4 cut(s)	263, 335, 511, 624
Bst6I	CTCTTC	2 cut(s)	73, 231
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	439
BstKTI	GATC	5 cut(s)	46, 445, 460, 564, 592
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	43, 442, 457, 561, 589
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 251
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	6 cut(s)	134, 142, 172, 185, 238, 562
BstX2I	RGATCY	2 cut(s)	43, 457
BstYI	RGATCY	2 cut(s)	43, 457
Bsu15I	ATCGAT	2 cut(s)	7, 588
BsuTUI	ATCGAT	2 cut(s)	7, 588
BtsIMutI	CAGTG	3 cut(s)	57, 322, 520
BveI	ACCTGC	1 cut(s)	510
Cfr13I	GGNCC	4 cut(s)	113, 164, 271, 319
ClaI	ATCGAT	2 cut(s)	7, 588
Csp6I	GTAC	2 cut(s)	300, 499
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	9 cut(s)	125, 155, 176, 185, 214, 251, 492, 579, 596
CviKI_1	RGCY	9 cut(s)	125, 155, 176, 185, 214, 251, 492, 579, 596
CviQI	GTAC	2 cut(s)	300, 499
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	5 cut(s)	45, 444, 459, 563, 591
DpnII	GATC	5 cut(s)	43, 442, 457, 561, 589
DraI	TTTAAA	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	2 cut(s)	73, 231
EarI	CTCTTC	2 cut(s)	73, 231
EciI	GGCGGA	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	4 cut(s)	113, 164, 271, 319
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	598
FaeI	CATG	1 cut(s)	18
FaiI	YATR	8 cut(s)	16, 351, 360, 370, 480, 507, 530, 534
FaqI	GGGAC	2 cut(s)	388, 467
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	6 cut(s)	123, 156, 174, 186, 252, 551
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	6 cut(s)	123, 156, 174, 186, 252, 551
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	6 cut(s)	123, 156, 174, 186, 252, 551
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	437, 544, 585
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	5 cut(s)	35, 73, 235, 424, 442
Hpy188III	TCNNGA	4 cut(s)	314, 430, 446, 582
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	104, 155, 278
HpyCH4III	ACNGT	4 cut(s)	263, 335, 511, 624
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	4, 468, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 251
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	581
Kzo9I	GATC	5 cut(s)	43, 442, 457, 561, 589
LmnI	GCTCC	2 cut(s)	181, 584
Lsp1109I	GCAGC	6 cut(s)	134, 142, 172, 185, 238, 562
LweI	GCATC	3 cut(s)	13, 405, 477
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	53, 191
MalI	GATC	5 cut(s)	45, 444, 459, 563, 591
MboI	GATC	5 cut(s)	43, 442, 457, 561, 589
MboII	GAAGA	3 cut(s)	60, 149, 248
MflI	RGATCY	2 cut(s)	43, 457
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	3 cut(s)	293, 303, 537
MlyI	GAGTC	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	581
MseI	TTAA	2 cut(s)	204, 399
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	393
MssI	GTTTAAAC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	182, 251
NdeII	GATC	5 cut(s)	43, 442, 457, 561, 589
NlaIII	CATG	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	544, 585
PkrI	GCNGC	6 cut(s)	124, 157, 175, 187, 253, 552
Ple19I	CGATCG	1 cut(s)	592
PleI	GAGTC	1 cut(s)	431
PmeI	GTTTAAAC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspPI	GGNCC	4 cut(s)	113, 164, 271, 319
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	43, 457
PvuI	CGATCG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	301, 500
RsaNI	GTAC	2 cut(s)	300, 499
SaqAI	TTAA	2 cut(s)	204, 399
SatI	GCNGC	6 cut(s)	123, 156, 174, 186, 252, 551
Sau3AI	GATC	5 cut(s)	43, 442, 457, 561, 589
Sau96I	GGNCC	4 cut(s)	113, 164, 271, 319
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	8 cut(s)	178, 216, 226, 276, 289, 504, 576, 581
SfaNI	GCATC	3 cut(s)	13, 405, 477
SinI	GGWCC	4 cut(s)	113, 164, 271, 319
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	293, 303, 537
SsiI	CCGC	2 cut(s)	389, 606
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	4 cut(s)	263, 335, 511, 624
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	5 cut(s)	7, 279, 471, 588, 592
TasI	AATT	3 cut(s)	293, 303, 537
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	544, 585
Tru1I	TTAA	2 cut(s)	204, 399
Tru9I	TTAA	2 cut(s)	204, 399
TscAI	CASTG	3 cut(s)	64, 329, 520
TseI	GCWGC	6 cut(s)	122, 155, 173, 185, 251, 550
TspDTI	ATGAA	2 cut(s)	297, 373
TspRI	CASTG	3 cut(s)	64, 329, 520
VpaK11BI	GGWCC	4 cut(s)	113, 164, 271, 319
XapI	RAATTY	2 cut(s)	293, 537
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.