Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

74008781 .. 74009737

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG516700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAGAAGCGGCTGGCCCACATCAAATATGGGTTTGCAGAATTGGTGAAGATACAGGTAGAAGAAGGAGACGATCTAGATGATGACAATGAGACGGTTCTGAAGGACGTTCTCTTTGGGAATAACAATGTCAACGGCATGGATCGCCTATCGGATGGCTTGCCTTGGGATAGTGGCGGTGCTGTGATCGTCACTAGTAGGAGGCTGGAAGTGGCTCAACAAATGGTGGGCGCAGATAACTTGATTATTCCTGTCAAGCCTATGGACAAACAAAACTGCTGGTGTATATTAATGGATGCTATACTGCGTGATGATCATCAGGGTGTCTATAATTATACTAATGATATTAAAGACAATAATCATGATTTTGATCCTAGTAGAGAGGAAAAGTTTAGCGAACAAGCTCCTGCAAAAGCTTTGAATAGGATCAAGGATCAAATTGAGGAGGAATTTCAGGGTCTACCATTTGCTGCTAAGGTACTCGCAACCGCCTTTCCTGGACACATTCGTACAAGAGATGCAGGAAGGTTCCCAATAGAGTTTGAGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat NB-ARC

Protein Analysis

184

Amino Acids

20.84

Weight (kDa)

4.79

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AciI	CCGC	3 cut(s)	10, 177, 489
AclWI	GGATC	4 cut(s)	150, 365, 434, 441
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	480, 511
AgsI	TTSAA	1 cut(s)	421
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	404, 416
AluI	AGCT	2 cut(s)	404, 416
Alw26I	GTCTC	2 cut(s)	63, 86
AlwI	GGATC	4 cut(s)	150, 365, 434, 441
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	63, 86
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	77, 195, 375
BisI	GCNGC	2 cut(s)	11, 471
BlsI	GCNGC	2 cut(s)	12, 472
Bme1390I	CCNGG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	286, 508
Bpu10I	CCTNAGC	1 cut(s)	474
BsaBI	GATNNNNATC	2 cut(s)	315, 369
BsaJI	CCNNGG	1 cut(s)	164
Bse8I	GATNNNNATC	2 cut(s)	315, 369
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	160, 301
BseJI	GATNNNNATC	2 cut(s)	315, 369
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	1 cut(s)	17
BsmAI	GTCTC	2 cut(s)	63, 86
BsmBI	CGTCTC	2 cut(s)	63, 86
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
BspACI	CCGC	3 cut(s)	10, 177, 489
BspANI	GGCC	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	530
BspPI	GGATC	4 cut(s)	150, 365, 434, 441
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	15, 161
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	160, 301
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	7 cut(s)	76, 145, 189, 316, 373, 429, 436
BstMAI	GTCTC	2 cut(s)	63, 86
BstMBI	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	160, 301
Cac8I	GCNNGC	2 cut(s)	15, 161
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	479, 510
CviAII	CATG	2 cut(s)	139, 362
CviJI	RGCY	8 cut(s)	13, 17, 159, 205, 215, 259, 404, 416
CviKI_1	RGCY	8 cut(s)	13, 17, 159, 205, 215, 259, 404, 416
CviQI	GTAC	2 cut(s)	479, 510
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	7 cut(s)	75, 144, 188, 315, 372, 428, 435
DpnII	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	2 cut(s)	63, 86
FaeI	CATG	2 cut(s)	142, 365
FaiI	YATR	8 cut(s)	30, 140, 263, 287, 302, 330, 336, 363
FatI	CATG	2 cut(s)	138, 361
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	11, 471
FokI	GGATG	2 cut(s)	167, 308
Fsp4HI	GCNGC	2 cut(s)	11, 471
FspBI	CTAG	3 cut(s)	77, 195, 375
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	11, 471
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	142, 365
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	414
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	133, 461
Hpy188I	TCNGA	2 cut(s)	102, 154
Hpy188III	TCNNGA	2 cut(s)	77, 362
Hpy8I	GTNNAC	2 cut(s)	133, 461
HpyAV	CCTTC	3 cut(s)	59, 97, 519
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	38, 410, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	142, 365
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	286, 508
MaeI	CTAG	3 cut(s)	77, 195, 375
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	7 cut(s)	75, 144, 188, 315, 372, 428, 435
MboI	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
MboII	GAAGA	3 cut(s)	16, 61, 74
MluCI	AATT	4 cut(s)	41, 331, 438, 449
MnlI	CCTC	4 cut(s)	195, 376, 436, 439
MseI	TTAA	3 cut(s)	290, 348, 553
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
NlaIII	CATG	2 cut(s)	142, 365
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	12, 472
PshBI	ATTAAT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	480, 511
RsaNI	GTAC	2 cut(s)	479, 510
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	290, 348, 553
SatI	GCNGC	2 cut(s)	11, 471
Sau3AI	GATC	7 cut(s)	73, 142, 186, 313, 370, 426, 433
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	6 cut(s)	60, 111, 406, 418, 480, 530
SfaNI	GCATC	2 cut(s)	286, 508
SmiMI	CAYNNNNRTG	1 cut(s)	321
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	41, 331, 438, 449
SsiI	CCGC	3 cut(s)	10, 177, 489
SspMI	CTAG	3 cut(s)	77, 195, 375
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	111
TasI	AATT	4 cut(s)	41, 331, 438, 449
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	290, 348, 553
Tru9I	TTAA	3 cut(s)	290, 348, 553
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	3 cut(s)	77, 195, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.