Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008829

Physical Location & Seq

Genomic Coordinates Reverse (-)

69647120 .. 69648270

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATCGCCTATCGGATGGCTTGCCTTGGGATAGTGGCGGTGCTGTGATCGTCACTAGTAGGAGGCTGGAAGTGGCTCAACAAATGGTGGGCGCAGATAACTTGATTATTCCTGTCAAGCCTATGGACAAACAAAACTGCTGGTGTATATTAATGGATGCTATACTGCGTGATGATCATCAGGGTGTCTATAATTATACTAATGATATTAAAGACAATAATCATGATTTTGATCCTAGTAGAGAGGAAAAGTTTAGCGAACAAGCTCCTGCAAAAGCTTTGAATAGGATCAAGGATCAAATTGAGGAGGAATTTCAGGGTCTACCATTTGCTGCTAAGGTACTCGCAACCGCCTTTCCTGGACACATTCGTACAAGAGATGCAGGAAGGTTCCCAATAGAGTTTGAGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004143 GO:0004672 GO:0005488 GO:0005524 GO:0005575 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007205 GO:0008144 GO:0008150 GO:0008152 GO:0008289 GO:0009653 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019992 GO:0023052 GO:0030554 GO:0032101 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0040012 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048583 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050920 GO:0050926 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat NB-ARC

Protein Analysis

138

Amino Acids

15.65

Weight (kDa)

4.89

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12752
rosa_chinensis	RchiOBHm_Chr2g0152231
rosa_laevigata	RLG00000020618 RLG00000020619
rosa_multiflora	Rmu_sc0003043.1_g000009
rosa_rugosa	Rorug02G0431400
rosa_samantha	Rh2AG492900 Rh2AG493400 Rh2BG505500 Rh2BG505700 Rh2CG479600 Rh2DG516700 Rh2DG516800 Rh4DG168500 Rh7AG133400 Rh7AG367400 Rh7CG137300 Rh7CG385700 Rh7DG135400 Rh7DG361400 Rh7DG365000
rosa_wichuraiana	Rw2G040530 Rw4G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	2 cut(s)	39, 351
AclWI	GGATC	4 cut(s)	12, 227, 296, 303
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	2 cut(s)	342, 373
AgsI	TTSAA	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	266, 278
AluI	AGCT	2 cut(s)	266, 278
AlwI	GGATC	4 cut(s)	12, 227, 296, 303
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	311
AseI	ATTAAT	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	175
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	2 cut(s)	57, 237
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	148, 370
Bpu10I	CCTNAGC	1 cut(s)	336
BsaBI	GATNNNNATC	2 cut(s)	177, 231
BsaJI	CCNNGG	1 cut(s)	26
Bse8I	GATNNNNATC	2 cut(s)	177, 231
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	22, 163
BseJI	GATNNNNATC	2 cut(s)	177, 231
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	319
Bsp143I	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
BspACI	CCGC	2 cut(s)	39, 351
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	392
BspPI	GGATC	4 cut(s)	12, 227, 296, 303
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	22, 163
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	6 cut(s)	7, 51, 178, 235, 291, 298
BstMBI	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	22, 163
Cac8I	GCNNGC	1 cut(s)	23
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	341, 372
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	6 cut(s)	21, 67, 77, 121, 266, 278
CviKI_1	RGCY	6 cut(s)	21, 67, 77, 121, 266, 278
CviQI	GTAC	2 cut(s)	341, 372
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	6 cut(s)	6, 50, 177, 234, 290, 297
DpnII	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	125, 149, 164, 192, 198, 225
FatI	CATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	29, 170
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	57, 237
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	272, 383
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	53, 126, 127, 167, 282, 302, 345, 369, 372
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	148, 370
MaeI	CTAG	2 cut(s)	57, 237
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	6, 50, 177, 234, 290, 297
MboI	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
MluCI	AATT	3 cut(s)	193, 300, 311
MnlI	CCTC	4 cut(s)	57, 238, 298, 301
MseI	TTAA	3 cut(s)	152, 210, 415
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
NdeII	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	392
RsaI	GTAC	2 cut(s)	342, 373
RsaNI	GTAC	2 cut(s)	341, 372
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	152, 210, 415
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	6 cut(s)	4, 48, 175, 232, 288, 295
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	4 cut(s)	268, 280, 342, 392
SfaNI	GCATC	2 cut(s)	148, 370
SmiMI	CAYNNNNRTG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	3 cut(s)	193, 300, 311
SsiI	CCGC	2 cut(s)	39, 351
SspMI	CTAG	2 cut(s)	57, 237
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	26
TasI	AATT	3 cut(s)	193, 300, 311
Tru1I	TTAA	3 cut(s)	152, 210, 415
Tru9I	TTAA	3 cut(s)	152, 210, 415
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	152
XapI	RAATTY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	57, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.