Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

7597459 .. 7598262

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTCTCATCCCAACAACGTACAATCTTCAACAGTTCCAAAGCAATTGGTATATCTCTATCTGATAATCAGCTCTCTGGCAATCTCCCAACAGATATAGGAGTTGGCCTTCCAAACCTACAAAAATTCCTCCTAGGAAGAAATAAACTGAGCGGAGTGATCCCTAAATCCATTTCCAATGCTTCTCAGCTCACTTTAATAGAATTGGGAGAAAACAATCTATCAGGCTTTATTCCTAGCTCACTATGTGCCTTAATAAACCTTCAGAAACTTTCCTTATTTGAAAATAACTTAACTTTTGACACTACAACTTCAAAAGCAAATATTCTCTCTTGCTTGACAAATCTCAAAAACTTGAGGGACTTAAGCTTCTCAGGCAATCCTTTAAATGCCAACCTTCCTGTTTCCTTTAGGAATCTCTCTTCATCACTTCAAAGTGTTTATCTATACAATTGCAACATGAGGGGTAACATTCCTGATGATATAGGCAACTTGAGCAGCTTGACAGCCTTAGCCATGTATAACAACAAATTGAGTGGATCAATTCCAGCCTCACTAGGAACTTTGAGAAATCTCCAAGCTTTGAGTTTGGGTGGTAACGAATTGCAAGGACACATCCCAGATGAACTTTGCCAACTACAATACCTTGTTATCTTAGGATTGCATGATAACCGGCTCTCTAGCTCTATACCTTCTTGTTTGGGTCACCTAGCCACTGCACTACAAATTCTAAATCTAGGGTCCAATTTGTTGAATTCTACAATACCATCTACCTTGTATGGGCTCACAACATCTTGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

28.51

Weight (kDa)

8.22

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	27 - 151	7.8e-06	Leucine-rich repeat region
LRR_8	PF13855	38 - 98	3.1e-07	Leucine rich repeat
LRR_14	PF23598	149 - 247	3.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	154, 547
AcsI	RAATTY	3 cut(s)	125, 726, 754
AcuI	CTGAAG	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	5 cut(s)	31, 284, 315, 434, 754
AluBI	AGCT	7 cut(s)	73, 190, 240, 369, 501, 581, 684
AluI	AGCT	7 cut(s)	73, 190, 240, 369, 501, 581, 684
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	154, 547
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	3 cut(s)	125, 726, 754
AspA2I	CCTAGG	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	741
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	741
AvrII	CCTAGG	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	1 cut(s)	775
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	6 cut(s)	134, 237, 557, 681, 710, 737
BfrI	CTTAAG	1 cut(s)	364
BisI	GCNGC	1 cut(s)	499
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	1 cut(s)	742
Bpu10I	CCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	2 cut(s)	376, 514
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse118I	RCCGGY	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	8, 615
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMII	CTCAG	3 cut(s)	140, 200, 387
BseXI	GCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	2 cut(s)	159, 539
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	141, 199, 386
BspLI	GGNNCC	1 cut(s)	742
BspPI	GGATC	2 cut(s)	154, 547
BspTI	CTTAAG	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	672
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	159, 539
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	427
BstAFI	CTTAAG	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	149, 186, 373, 511, 655
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	2 cut(s)	8, 615
BstKTI	GATC	2 cut(s)	162, 542
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	159, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 495
BstPI	GGTNACC	1 cut(s)	704
BstV1I	GCAGC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	8, 615
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cfr10I	RCCGGY	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	3 cut(s)	460, 517, 665
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	5 cut(s)	149, 186, 373, 511, 655
DpnI	GATC	2 cut(s)	161, 541
DpnII	GATC	2 cut(s)	159, 539
DraI	TTTAAA	1 cut(s)	387
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	463, 520, 668
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	459, 516, 664
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	6 cut(s)	134, 237, 557, 681, 710, 737
GluI	GCNGC	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	3 cut(s)	463, 520, 668
HindIII	AAGCTT	2 cut(s)	367, 579
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	1 cut(s)	698
Hpy188I	TCNGA	2 cut(s)	64, 267
Hpy188III	TCNNGA	1 cut(s)	476
HpyAV	CCTTC	4 cut(s)	119, 272, 407, 702
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	456, 607, 664, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 495
HpyF3I	CTNAG	5 cut(s)	149, 186, 373, 511, 655
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	463, 520, 668
Kzo9I	GATC	2 cut(s)	159, 539
LpnPI	CCDG	8 cut(s)	63, 210, 360, 414, 489, 561, 633, 686
Lsp1109I	GCAGC	1 cut(s)	510
MaeI	CTAG	6 cut(s)	134, 237, 557, 681, 710, 737
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	3 cut(s)	467, 596, 704
MalI	GATC	2 cut(s)	161, 541
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	159, 539
MboII	GAAGA	3 cut(s)	19, 150, 414
MfeI	CAATTG	2 cut(s)	45, 451
MhlI	GDGCHC	1 cut(s)	786
MnlI	CCTC	4 cut(s)	140, 351, 456, 562
MseI	TTAA	5 cut(s)	197, 254, 293, 365, 386
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	1 cut(s)	673
MunI	CAATTG	2 cut(s)	45, 451
MwoI	GCNNNNNNNGC	2 cut(s)	375, 495
NdeII	GATC	2 cut(s)	159, 539
NlaIII	CATG	3 cut(s)	463, 520, 668
NlaIV	GGNNCC	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	500
PspEI	GGTNACC	1 cut(s)	704
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	741
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	197, 254, 293, 365, 386
SatI	GCNGC	1 cut(s)	499
Sau3AI	GATC	2 cut(s)	159, 539
Sau96I	GGNCC	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	786
SinI	GGWCC	1 cut(s)	741
SmlI	CTYRAG	3 cut(s)	355, 364, 493
SmoI	CTYRAG	3 cut(s)	355, 364, 493
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	6 cut(s)	134, 237, 557, 681, 710, 737
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	5 cut(s)	197, 254, 293, 365, 386
Tru9I	TTAA	5 cut(s)	197, 254, 293, 365, 386
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	414, 639
TspRI	CASTG	1 cut(s)	721
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	741
XapI	RAATTY	3 cut(s)	125, 726, 754
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	6 cut(s)	134, 237, 557, 681, 710, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.