Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000400.1

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

338873 .. 340076

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000400.1_g000090.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgatattaactgtggcaggtactataccagaagctattggtcgtcttgaaaatttacaggctttgtcgttgtttggtaataatctctatggccccatcccatccacaatcttcaacatgtccaagataataaaaatttcgcttgctattaaccatatctcaggtagcctccctgcaaacatgggtagtaggctaccaaacttagaagagttctatgtaccagataataatctcagcggattaatccccaacctcatctcaaatgcttctaagctcataaaaatagacctggccttgaacacattttctggctctgttccaacaactctttgtgcctcaccaaaccttcaattgcttcaactagagctgaataatttgaccattgatacgtctagtccaaaagcaagcatattctcatgtttgggagaacttagaaatttgagggggctatccctgtatggcaatcctttaaatgtcccacttcctagttcacttgggaacctatcttcatctcttcaaaaccttgatataagcatctgcaacatgagaggtaacattcccaatgagataggcaacttgaccagcttgacattcttaaacttggaatacaatcaattgtcgggatcaattccaacttcaatgggaagattggggaatctccaaggtttgtacttgaataataacaaattgcaaggatacatcccagatgaactttgtgaactaaggaacctatataacttatttttgggtggtaatctactcactggtcctataccttcttgcatggacgaaattgcctcctcgtcggtgcttgaagggttattggcaaacgtctcccaggagtacagcgatcaaactttcctccagaagaagcactacaatcttgaggatcaacgaacacaaattgtgtttttctctctcaatctcttaaactctaatgtgatatgtagaaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04016 map04064 map04620 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

319

Amino Acids

34.75

Weight (kDa)

5.26

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	8
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	631, 897
AcsI	RAATTY	3 cut(s)	52, 135, 436
AfaI	GTAC	4 cut(s)	22, 219, 671, 845
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	9 cut(s)	50, 115, 298, 350, 359, 518, 639, 676, 815
AjnI	CCWGG	2 cut(s)	288, 837
AluBI	AGCT	4 cut(s)	35, 274, 367, 585
AluI	AGCT	4 cut(s)	35, 274, 367, 585
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	631, 897
AoxI	GGCC	2 cut(s)	91, 291
ApoI	RAATTY	3 cut(s)	52, 135, 436
AseI	ATTAAT	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	92, 767
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	767
BarI	GAAGNNNNNNTAC	2 cut(s)	860, 892
BccI	CCATC	2 cut(s)	104, 109
BciT130I	CCWGG	2 cut(s)	290, 839
BciVI	GTATCC	1 cut(s)	689
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	3 cut(s)	362, 393, 486
BfuAI	ACCTGC	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	689
Bme1390I	CCNGG	2 cut(s)	290, 839
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	92, 767
BmiI	GGNNCC	3 cut(s)	94, 500, 728
BmrFI	CCNGG	2 cut(s)	290, 839
BmsI	GCATC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	661, 837
Bse1I	ACTGG	1 cut(s)	769
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	290, 839
BseDI	CCNNGG	2 cut(s)	661, 837
BseGI	GGATG	3 cut(s)	96, 101, 699
BseJI	GATNNNNATC	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	174, 247
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	1 cut(s)	790
BshFI	GGCC	2 cut(s)	93, 293
BslFI	GGGAC	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	838
BsmBI	CGTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	93, 293
Bsp143I	GATC	3 cut(s)	623, 850, 889
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	93, 293
BspCNI	CTCAG	2 cut(s)	173, 246
BspLI	GGNNCC	3 cut(s)	94, 500, 728
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	631, 897
BsrI	ACTGG	1 cut(s)	769
BssECI	CCNNGG	2 cut(s)	661, 837
BssMI	GATC	3 cut(s)	623, 850, 889
BssT1I	CCWWGG	1 cut(s)	661
Bst2UI	CCWGG	2 cut(s)	290, 839
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	201, 519
BstC8I	GCNNGC	2 cut(s)	144, 406
BstDEI	CTNAG	6 cut(s)	160, 202, 233, 270, 431, 722
BstF5I	GGATG	3 cut(s)	96, 101, 699
BstKTI	GATC	3 cut(s)	626, 853, 892
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	3 cut(s)	623, 850, 889
BstNI	CCWGG	2 cut(s)	290, 839
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	288, 837
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	2 cut(s)	93, 293
BtsCI	GGATG	3 cut(s)	96, 101, 699
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	144, 406
Cfr13I	GGNCC	2 cut(s)	92, 767
Csp6I	GTAC	4 cut(s)	21, 218, 670, 844
CviAII	CATG	5 cut(s)	118, 181, 417, 544, 784
CviQI	GTAC	4 cut(s)	21, 218, 670, 844
DdeI	CTNAG	6 cut(s)	160, 202, 233, 270, 431, 722
DpnI	GATC	3 cut(s)	625, 852, 891
DpnII	GATC	3 cut(s)	623, 850, 889
DraI	TTTAAA	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	201, 519
EarI	CTCTTC	2 cut(s)	201, 519
Eco130I	CCWWGG	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	288, 837
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	838
FaeI	CATG	5 cut(s)	121, 184, 420, 547, 787
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	5 cut(s)	117, 180, 416, 543, 783
FokI	GGATG	3 cut(s)	83, 88, 686
FspBI	CTAG	3 cut(s)	362, 393, 486
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	2 cut(s)	93, 293
Hin1II	CATG	5 cut(s)	121, 184, 420, 547, 787
HinfI	GANTC	1 cut(s)	655
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	491, 719
Hpy188III	TCNNGA	4 cut(s)	47, 621, 865, 884
Hpy8I	GTNNAC	2 cut(s)	491, 719
Hpy99I	CGWCG	1 cut(s)	808
HpyAV	CCTTC	3 cut(s)	356, 786, 809
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	389, 831
HpyCH4V	TGCA	4 cut(s)	176, 540, 691, 783
HpyF3I	CTNAG	6 cut(s)	160, 202, 233, 270, 431, 722
HpySE526I	ACGT	2 cut(s)	389, 831
Hsp92II	CATG	5 cut(s)	121, 184, 420, 547, 787
Kzo9I	GATC	3 cut(s)	623, 850, 889
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	3 cut(s)	362, 393, 486
MaeII	ACGT	2 cut(s)	389, 831
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	3 cut(s)	625, 852, 891
MboI	GATC	3 cut(s)	623, 850, 889
MboII	GAAGA	6 cut(s)	103, 218, 498, 506, 657, 880
MfeI	CAATTG	2 cut(s)	350, 614
MmeI	TCCRAC	2 cut(s)	344, 656
MnlI	CCTC	9 cut(s)	179, 263, 346, 435, 542, 808, 811, 872, 880
MseI	TTAA	6 cut(s)	8, 150, 242, 470, 596, 929
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	290, 839
MunI	CAATTG	2 cut(s)	350, 614
MvaI	CCWGG	2 cut(s)	290, 839
NdeII	GATC	3 cut(s)	623, 850, 889
NlaIII	CATG	5 cut(s)	121, 184, 420, 547, 787
NlaIV	GGNNCC	3 cut(s)	94, 500, 728
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	655
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	288, 837
PspGI	CCWGG	2 cut(s)	288, 837
PspN4I	GGNNCC	3 cut(s)	94, 500, 728
PspPI	GGNCC	2 cut(s)	92, 767
RsaI	GTAC	4 cut(s)	22, 219, 671, 845
RsaNI	GTAC	4 cut(s)	21, 218, 670, 844
SaqAI	TTAA	6 cut(s)	8, 150, 242, 470, 596, 929
Sau3AI	GATC	3 cut(s)	623, 850, 889
Sau96I	GGNCC	2 cut(s)	92, 767
ScrFI	CCNGG	2 cut(s)	290, 839
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	3 cut(s)	362, 393, 486
StyD4I	CCNGG	2 cut(s)	288, 837
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	392, 834
TatI	WGTACW	2 cut(s)	669, 843
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	6 cut(s)	8, 150, 242, 470, 596, 929
Tru9I	TTAA	6 cut(s)	8, 150, 242, 470, 596, 929
TscAI	CASTG	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	498, 723
TspRI	CASTG	1 cut(s)	769
VpaK11BI	GGWCC	1 cut(s)	767
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	3 cut(s)	52, 135, 436
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	3 cut(s)	362, 393, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.