Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

7472944 .. 7476659

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAGAGCTCAGTTCTTCCTCTTGTGCATAACATTGTTGCTTTGCATGGCCAGAACACAAACCAATTTGACGACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCTAATATCACTAGTGACCCTCAAGACTTGTTGTCCAACTGGTCTACCAATACCTCCGTTTGCAACTGGGTTGGGATATTGTCACGCGGGCAAAACAACCTCAATGGCGTCATCCCATCTTCAATCTTCAATATGTCCACAATAAGAATAATATCGCTTGTCGACAATCAGCTCTCAGGTAGCCTTCCAACAAACATAGGCCTTGGGCTTCCAGACCTACAAAAGCTCTTTCTAGGAAACAATAAACTCACGGGAGTAATCCCCAAATCCATCTCCAATATTTCTCAGCTCACAGTACTAGATCTGGGCTTTAACTTCTTATCTGCCTTTATTCCTAGCCCGCTTTGTGCCTTAACAAAGCTTCAGTTAGGCCTCATCAAAAAGCCCGCGGATCAAGTGGGCCGATGGAGGCCCGCCGGCCCGCAGGGCTTTTGGCCTGGCCCGGCCCGTCAAAAAACCCGCAAAAGCCCGCCTTGGTGGGCCGATGGAGGCCCGCAAAAAAGCCCGCAAAAACCCGGCCCATATTTGACGGAATTAGCCTTATCAGACAATCCATTAAATGCCAACCTTCCCATTTCCTTTAGGAATCTGTCTACATCACTTGAAAACATTAGGTTAGATAATTGCAATATGAGAGGTAACATTCCCAATGATATTGGCAACTTGAGCAGCTTGATCCGCCTAGAATTGGGAAACAATCAATTGAGTGGACCAATTCCAACCTCAATGGGAGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

281

Amino Acids

30.45

Weight (kDa)

9.54

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 61	4.4e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	84 - 140	2.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AccI	GTMKAC	3 cut(s)	149, 267, 698
AccII	CGCG	2 cut(s)	192, 494
AclWI	GGATC	2 cut(s)	504, 775
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	3 cut(s)	228, 235, 710
AhdI	GACNNNNNGTC	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	7 cut(s)	11, 107, 277, 331, 394, 466, 777
AluI	AGCT	7 cut(s)	11, 107, 277, 331, 394, 466, 777
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	504, 775
ApeKI	GCWGC	1 cut(s)	774
AspS9I	GGNCC	9 cut(s)	505, 516, 524, 545, 550, 585, 596, 623, 815
AsuC2I	CCSGG	2 cut(s)	548, 621
AvaII	GGWCC	1 cut(s)	815
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	786
BccI	CCATC	4 cut(s)	229, 383, 504, 584
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	2 cut(s)	548, 621
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	5 cut(s)	117, 338, 404, 441, 788
BfmI	CTRYAG	1 cut(s)	842
BglI	GCCNNNNNGGC	1 cut(s)	531
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	775
BlsI	GCNGC	1 cut(s)	776
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	3 cut(s)	543, 548, 621
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	9 cut(s)	505, 516, 524, 545, 550, 585, 596, 623, 815
BmrFI	CCNGG	3 cut(s)	543, 548, 621
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	111, 790
BpuMI	CCSGG	2 cut(s)	548, 621
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	307, 492, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	3 cut(s)	82, 149, 176
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	307, 492, 578
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMII	CTCAG	3 cut(s)	26, 294, 404
BseNI	ACTGG	3 cut(s)	82, 149, 176
BseXI	GCAGC	1 cut(s)	786
Bsh1236I	CGCG	2 cut(s)	192, 494
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	522, 548, 621
BslI	CCNNNNNNNGG	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	406, 496, 780
BspCNI	CTCAG	3 cut(s)	25, 293, 403
BspFNI	CGCG	2 cut(s)	192, 494
BspPI	GGATC	2 cut(s)	504, 775
BspQI	GCTCTTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	82, 149, 176
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	307, 492, 578
BssMI	GATC	3 cut(s)	406, 496, 780
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	307, 578
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	9 cut(s)	194, 446, 492, 519, 523, 527, 575, 599, 611
BstDEI	CTNAG	3 cut(s)	12, 280, 390
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	2 cut(s)	192, 494
BstKTI	GATC	3 cut(s)	409, 499, 783
BstMBI	GATC	3 cut(s)	406, 496, 780
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 104, 531, 771, 783
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	3 cut(s)	541, 546, 619
BstSFI	CTRYAG	1 cut(s)	842
BstUI	CGCG	2 cut(s)	192, 494
BstV1I	GCAGC	1 cut(s)	786
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	9 cut(s)	194, 446, 492, 519, 523, 527, 575, 599, 611
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	9 cut(s)	505, 516, 524, 545, 550, 585, 596, 623, 815
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	12, 280, 390
DpnI	GATC	3 cut(s)	408, 498, 782
DpnII	GATC	3 cut(s)	406, 496, 780
DrdI	GACNNNNNNGTC	1 cut(s)	82
DriI	GACNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	96
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	307, 578
Eco147I	AGGCCT	2 cut(s)	306, 477
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	307, 578
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	307, 578
FaeI	CATG	1 cut(s)	52
FaiI	YATR	7 cut(s)	32, 50, 239, 302, 628, 737, 844
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FatI	CATG	1 cut(s)	48
FauI	CCCGC	9 cut(s)	185, 453, 499, 526, 534, 572, 582, 606, 618
FblI	GTMKAC	3 cut(s)	149, 267, 698
Fnu4HI	GCNGC	1 cut(s)	775
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	775
FspBI	CTAG	5 cut(s)	117, 338, 404, 441, 788
GluI	GCNGC	1 cut(s)	775
HapII	CCGG	3 cut(s)	522, 548, 621
HgaI	GACGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	522, 548, 621
Hpy166II	GTNNAC	5 cut(s)	150, 243, 268, 699, 815
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	2 cut(s)	128, 317
Hpy8I	GTNNAC	5 cut(s)	150, 243, 268, 699, 815
HpyAV	CCTTC	2 cut(s)	299, 683
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	4 cut(s)	30, 48, 168, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 104, 531, 771, 783
HpyF3I	CTNAG	3 cut(s)	12, 280, 390
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	406, 496, 780
LguI	GCTCTTC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	786
MaeI	CTAG	5 cut(s)	117, 338, 404, 441, 788
MaeIII	GTNAC	3 cut(s)	119, 186, 743
MalI	GATC	3 cut(s)	408, 498, 782
MboI	GATC	3 cut(s)	406, 496, 780
MboII	GAAGA	4 cut(s)	10, 83, 216, 223
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	6 cut(s)	67, 638, 727, 791, 806, 819
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	165, 317
Mox20I	TGGCCA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	3 cut(s)	417, 458, 662
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	522, 548, 621
MspR9I	CCNGG	3 cut(s)	543, 548, 621
MunI	CAATTG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	192, 494
MwoI	GCNNNNNNNGC	5 cut(s)	95, 104, 531, 771, 783
NaeI	GCCGGC	1 cut(s)	523
NciI	CCSGG	2 cut(s)	548, 621
NdeII	GATC	3 cut(s)	406, 496, 780
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	119, 186
PceI	AGGCCT	2 cut(s)	306, 477
PciSI	GCTCTTC	1 cut(s)	96
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	9 cut(s)	505, 516, 524, 545, 550, 585, 596, 623, 815
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	495
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	417, 458, 662
SatI	GCNGC	1 cut(s)	775
Sau3AI	GATC	3 cut(s)	406, 496, 780
Sau96I	GGNCC	9 cut(s)	505, 516, 524, 545, 550, 585, 596, 623, 815
ScaI	AGTACT	1 cut(s)	402
ScrFI	CCNGG	3 cut(s)	543, 548, 621
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	842
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	126, 769
SmoI	CTYRAG	2 cut(s)	126, 769
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	6 cut(s)	67, 638, 727, 791, 806, 819
SseBI	AGGCCT	2 cut(s)	306, 477
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	5 cut(s)	117, 338, 404, 441, 788
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	2 cut(s)	306, 477
StyD4I	CCNGG	3 cut(s)	541, 546, 619
StyI	CCWWGG	2 cut(s)	307, 578
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	267
TasI	AATT	6 cut(s)	67, 638, 727, 791, 806, 819
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	3 cut(s)	417, 458, 662
Tru9I	TTAA	3 cut(s)	417, 458, 662
TseFI	GTSAC	2 cut(s)	119, 186
TseI	GCWGC	1 cut(s)	774
Tsp45I	GTSAC	2 cut(s)	119, 186
TspGWI	ACGGA	2 cut(s)	151, 650
VpaK11BI	GGWCC	1 cut(s)	815
XmiI	GTMKAC	3 cut(s)	149, 267, 698
XspI	CTAG	5 cut(s)	117, 338, 404, 441, 788
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.