Rh5BG288500

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006905
Physical Location & Seq
Reverse (-)
36720809 .. 36721132
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG288500.1

Sequence Viewer

Length: 324 bp
ATGTCCGCAATATCAATAATATCACTTGACAGCAACCAGTTCTCAGGTAACTTCCCAGCAAATATAGGCCTTGATCTTCCAAACCTACAAGCGCTCCTCGTAGGAGCAAATAAACTCATTGGAAGAGTCCCCGAATACATCTCTAATGCTTCTAAAATCACAAACTTAGACCTGGTCAGCAACTCATTTTCTGGTTTTATTCCTAGCTCGCTTTGTGCCTTAACAAACCTTGAGCGACTTAACTTAGGCCACAATAATTTAGCTATTGATACTTCGGCTCCAGAAAGAATTTTCTCTCTTGTTTGGCTAATTTTAGAAAATTGA

Protein Analysis

107

Amino Acids

11.51

Weight (kDa)

4.75

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 27 - 87 2.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcsI RAATTY 1 cut(s) 288
AfeI AGCGCT 1 cut(s) 93
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 207, 263
AluI AGCT 2 cut(s) 207, 263
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 2 cut(s) 67, 247
ApoI RAATTY 1 cut(s) 288
AspLEI GCGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 262, 292
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 69, 249
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 69, 249
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 69, 249
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 43, 166, 244
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 69, 249
Cac8I GCNNGC 1 cut(s) 209
CfoI GCGC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 171
CviJI RGCY 6 cut(s) 69, 207, 249, 263, 278, 307
CviKI_1 RGCY 6 cut(s) 69, 207, 249, 263, 278, 307
DdeI CTNAG 3 cut(s) 43, 166, 244
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 69
Eco47III AGCGCT 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 171
FaiI YATR 1 cut(s) 65
FaqI GGGAC 1 cut(s) 113
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 69, 249
HhaI GCGC 1 cut(s) 94
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 43, 166, 244
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 3 cut(s) 99, 104, 283
LpnPI CCDG 7 cut(s) 30, 50, 69, 158, 177, 185, 294
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 68, 135
MluCI AATT 4 cut(s) 256, 288, 309, 319
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 107
MseI TTAA 2 cut(s) 221, 240
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 279
PceI AGGCCT 1 cut(s) 69
PflFI GACNNNGTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 221, 240
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 173
SetI ASST 6 cut(s) 49, 87, 174, 209, 231, 265
SexAI ACCWGGT 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 256, 288, 309, 319
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 171
TasI AATT 4 cut(s) 256, 288, 309, 319
Tru1I TTAA 2 cut(s) 221, 240
Tru9I TTAA 2 cut(s) 221, 240
Tth111I GACNNNGTC 1 cut(s) 173
XapI RAATTY 1 cut(s) 288
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.