Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

57903054 .. 57913656

Gene Structure 10603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTAGGTACTATACCAGATGAGATTGGTGATCTTCCAAAATTGGGTTTAAACAATCTCAATGGCCTCATCCCATCCAGAGTCTTCAATATGCCCACAATACAAACATTTTCTCTTAATCACCTCTCGGGCAATCTCCCTGCAAACTTGTGGCTCGGGATTCCAAACTTGCAAGAATTTTTTGTAGAAGAGAATGAACTCAGCGGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCACAATGCAAAACTTGGGCCTTAACTCATTTTCAGGGCTTACACCTAGCATAGTTTGTGCCTTAGAAAACCTTCAACGGCTTAACTTACAGAGAAACTATTTGACTATTGATACATCTAGTCCAGAAGTAAACTTTCTCTCTTGTTTGGCCACTCTTAGAGATGTGAGGATATTAGCCTTGTCCTTGAATCCATTAAACACCAGCCTTCCTACTTCCAATTGGAATCTCTCTAGAGTAGAATATATAGATTTAAGCTATAACAACATGAGGGGTGGCATTCCTAGTGATATTGGCAATATGAGCAGCTTGATGACCTTACACCTGGAATACAATCAATTACGTGGACCAATTCAAACTACAATGGGAAGCCTAACGAATCTCCAAGGGTTGTACTTGAATGATAACCAACTGCAAGGGCACATCCCACATGAACTCTGTCAACTAGAAAACCTATTCGACTTACTATTGGGTGATATTGGTAATTTGAAAGTTGTGACAGATATGGATTTATCAAGCAACCATTTATCTGGGATTGCACCAGGAAGCATTAGGGGTCTTCAAGATTTGGATCCTCCAAACACACAGCATATGCATTTTAGGCGTGTTCAGTGGAATGGTTCAAGCAAATTAATATCAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04016 map04064 map04620 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

295

Amino Acids

32.6

Weight (kDa)

5.14

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	125 - 235	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	183 - 237	1.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	806, 819
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	2 cut(s)	10, 635
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	8 cut(s)	88, 317, 430, 596, 640, 730, 803, 864
AjnI	CCWGG	2 cut(s)	564, 781
AluBI	AGCT	2 cut(s)	498, 549
AluI	AGCT	2 cut(s)	498, 549
AlwI	GGATC	2 cut(s)	806, 819
Ama87I	CYCGRG	2 cut(s)	127, 155
AoxI	GGCC	3 cut(s)	64, 259, 390
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	872
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	259, 587
AsuHPI	GGTGA	3 cut(s)	41, 113, 725
AvaI	CYCGRG	2 cut(s)	127, 155
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	663
BalI	TGGCCA	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	811
BbsI	GAAGAC	2 cut(s)	76, 791
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	2 cut(s)	566, 783
BfaI	CTAG	5 cut(s)	288, 360, 474, 525, 686
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	2 cut(s)	566, 783
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	2 cut(s)	127, 155
BmgT120I	GGNCC	2 cut(s)	259, 587
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	566, 783
BpiI	GAAGAC	2 cut(s)	76, 791
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	566, 783
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	3 cut(s)	69, 74, 663
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	1 cut(s)	558
BshFI	GGCC	3 cut(s)	66, 261, 392
BsiHKCI	CYCGRG	2 cut(s)	127, 155
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	66, 261, 392
BsoBI	CYCGRG	2 cut(s)	127, 155
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	31, 240, 811
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	3 cut(s)	66, 261, 392
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	2 cut(s)	806, 819
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	3 cut(s)	31, 240, 811
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	2 cut(s)	566, 783
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	200, 304, 398
BstF5I	GGATG	3 cut(s)	69, 74, 663
BstKTI	GATC	3 cut(s)	34, 243, 814
BstMBI	GATC	3 cut(s)	31, 240, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	543, 841
BstNI	CCWGG	2 cut(s)	566, 783
BstSCI	CCNGG	2 cut(s)	564, 781
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	1 cut(s)	558
BstV2I	GAAGAC	2 cut(s)	76, 791
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	3 cut(s)	66, 261, 392
BtsCI	GGATG	3 cut(s)	69, 74, 663
BtsIMutI	CAGTG	1 cut(s)	857
Cfr13I	GGNCC	2 cut(s)	259, 587
Csp6I	GTAC	2 cut(s)	9, 634
CviAII	CATG	2 cut(s)	508, 671
CviQI	GTAC	2 cut(s)	9, 634
DdeI	CTNAG	3 cut(s)	200, 304, 398
DpnI	GATC	3 cut(s)	33, 242, 813
DpnII	GATC	3 cut(s)	31, 240, 811
DraI	TTTAAA	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	127, 155
EcoRII	CCWGG	2 cut(s)	564, 781
EcoT14I	CCWWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	511, 674
FatI	CATG	2 cut(s)	507, 670
FauNDI	CATATG	1 cut(s)	831
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	3 cut(s)	56, 61, 650
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	5 cut(s)	288, 360, 474, 525, 686
GluI	GCNGC	1 cut(s)	547
HaeIII	GGCC	3 cut(s)	66, 261, 392
Hin1II	CATG	2 cut(s)	511, 674
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HinfI	GANTC	5 cut(s)	81, 160, 430, 466, 619
HphI	GGTGA	3 cut(s)	41, 113, 725
Hpy166II	GTNNAC	3 cut(s)	373, 587, 683
Hpy188III	TCNNGA	5 cut(s)	78, 157, 365, 474, 803
Hpy8I	GTNNAC	3 cut(s)	373, 587, 683
HpyAV	CCTTC	2 cut(s)	323, 458
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	143, 172, 250, 655, 779, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	543, 841
HpyF3I	CTNAG	3 cut(s)	200, 304, 398
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	2 cut(s)	511, 674
Kzo9I	GATC	3 cut(s)	31, 240, 811
Lsp1109I	GCAGC	1 cut(s)	558
MaeI	CTAG	5 cut(s)	288, 360, 474, 525, 686
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	3 cut(s)	33, 242, 813
MboI	GATC	3 cut(s)	31, 240, 811
MboII	GAAGA	4 cut(s)	26, 76, 200, 791
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	1 cut(s)	663
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	7 cut(s)	41, 176, 460, 578, 591, 724, 869
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	77, 134, 402, 504, 825
Mox20I	TGGCCA	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	7 cut(s)	50, 117, 264, 324, 437, 494, 872
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	566, 783
MssI	GTTTAAAC	1 cut(s)	51
MunI	CAATTG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	566, 783
MwoI	GCNNNNNNNGC	2 cut(s)	543, 841
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	3 cut(s)	31, 240, 811
NlaIII	CATG	2 cut(s)	511, 674
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	736
NsiI	ATGCAT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	160, 430, 466, 619
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	1 cut(s)	89
PmeI	GTTTAAAC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	872
Psp6I	CCWGG	2 cut(s)	564, 781
PspGI	CCWGG	2 cut(s)	564, 781
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	2 cut(s)	259, 587
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	2 cut(s)	10, 635
RsaNI	GTAC	2 cut(s)	9, 634
SaqAI	TTAA	7 cut(s)	50, 117, 264, 324, 437, 494, 872
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	3 cut(s)	31, 240, 811
Sau96I	GGNCC	2 cut(s)	259, 587
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	566, 783
SduI	GDGCHC	1 cut(s)	663
SinI	GGWCC	1 cut(s)	587
Sse9I	AATT	7 cut(s)	41, 176, 460, 578, 591, 724, 869
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	5 cut(s)	288, 360, 474, 525, 686
StyD4I	CCNGG	2 cut(s)	564, 781
StyI	CCWWGG	1 cut(s)	625
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	699
TasI	AATT	7 cut(s)	41, 176, 460, 578, 591, 724, 869
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	4 cut(s)	160, 430, 466, 619
Tru1I	TTAA	7 cut(s)	50, 117, 264, 324, 437, 494, 872
Tru9I	TTAA	7 cut(s)	50, 117, 264, 324, 437, 494, 872
TscAI	CASTG	1 cut(s)	857
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	3 cut(s)	210, 211, 687
TspRI	CASTG	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	872
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	5 cut(s)	288, 360, 474, 525, 686
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.