Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000299.1

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

96791 .. 97843

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000299.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggggtctaattcattttccagcttcattccagtcacgctttgtaccttaccaattcttcagtggcttctcttatcgcttaacaatttgaccattgataacaatttgaccattgatacctccactccagaaacaaacattttctcatgtctagccaatcttagaaacttgagtatgttgaacctcgcaggcaatcctttgaacactgctctccctgcctccttagggaatctatctacatcactacagtatattgattttagaagatgcaacttcaagggtgacatccccaaggagataggcaacttgagcagcttgatcagcttgcaactaggattcaatcaactgagtggatcacttccaacgacactcggaagactacggaatctccaaggtctgtatttgagtgacaacaaattggtaggctatatcccagatgaactctgtcaactatacaacttagctgatatggaaatgcctcataatctcttctctggttctataccttcctgcttaggtgatctagccacatcactaaatttaatgtccaatttgttaacttcgacagtatcatctttcttgtggcaacttaaatgtatcctggacttagacttgtcatctaattctttggttggatctctctcagaagacattggtaatttgaaagttgtagcacatatagatttgtcaaacaaccatttctctggttctataccaagcagcattgggggtcttcaagatttgtttagtctctccttggcaaataataatctagaaggccatagtcctagttcatttgggaactcgctaagcctagaactcctggatctatccaacaatagtctttctggagtcattccgaagtctctagaagcactttcatatctccagtatctcaatttctctttcaacaaattgctaggagaaattccaacaagtggttatttcaaaacttctcttccgaatctttcgtctcaaatggtgcactctgtggcgcgacccgactgcttgttccaacgtgcaaaacgaaggcagctaacagatatttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

38.0

Weight (kDa)

5.16

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccII	CGCG	1 cut(s)	997
AclWI	GGATC	3 cut(s)	361, 643, 834
AcsI	RAATTY	2 cut(s)	538, 927
AcuI	CTGAAG	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	991
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	225, 938
AgsI	TTSAA	8 cut(s)	181, 202, 277, 340, 664, 737, 910, 949
AjnI	CCWGG	2 cut(s)	600, 822
AluBI	AGCT	5 cut(s)	24, 315, 324, 464, 1036
AluI	AGCT	5 cut(s)	24, 315, 324, 464, 1036
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	3 cut(s)	755, 870, 978
Alw44I	GTGCAC	1 cut(s)	983
AlwI	GGATC	3 cut(s)	361, 643, 834
AoxI	GGCC	1 cut(s)	778
ApaLI	GTGCAC	1 cut(s)	983
ApeKI	GCWGC	3 cut(s)	312, 720, 1033
ApoI	RAATTY	2 cut(s)	538, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AspLEI	GCGC	1 cut(s)	997
AsuHPI	GGTGA	2 cut(s)	293, 530
AxyI	CCTNAGG	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	987
BbsI	GAAGAC	3 cut(s)	382, 654, 725
Bbv12I	GWGCWC	1 cut(s)	987
BbvI	GCAGC	3 cut(s)	324, 732, 1045
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BciT130I	CCWGG	2 cut(s)	602, 824
BciVI	GTATCC	1 cut(s)	608
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	755, 870, 978
BfaI	CTAG	8 cut(s)	152, 332, 524, 773, 789, 815, 869, 920
BfmI	CTRYAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	608
BisI	GCNGC	3 cut(s)	313, 721, 1034
BlpI	GCTNAGC	1 cut(s)	809
BlsI	GCNGC	3 cut(s)	314, 722, 1035
Bme1390I	CCNGG	2 cut(s)	602, 824
BmrFI	CCNGG	2 cut(s)	602, 824
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	3 cut(s)	382, 654, 725
BpmI	CTGGAG	3 cut(s)	111, 870, 872
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	809
BpuEI	CTTGAG	2 cut(s)	190, 328
BsaJI	CCNNGG	3 cut(s)	291, 391, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 938
Bse1I	ACTGG	2 cut(s)	32, 889
Bse21I	CCTNAGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	602, 824
BseDI	CCNNGG	3 cut(s)	291, 391, 756
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	225, 938
BseMII	CTCAG	2 cut(s)	338, 657
BseNI	ACTGG	2 cut(s)	32, 889
BseSI	GKGCMC	1 cut(s)	987
BseXI	GCAGC	3 cut(s)	324, 732, 1045
Bsh1236I	CGCG	1 cut(s)	997
BshFI	GGCC	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	225, 938
BsmAI	GTCTC	3 cut(s)	755, 870, 978
BsmBI	CGTCTC	1 cut(s)	978
BsnI	GGCC	1 cut(s)	780
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp143I	GATC	5 cut(s)	318, 353, 520, 635, 826
Bsp1720I	GCTNAGC	1 cut(s)	809
BspANI	GGCC	1 cut(s)	780
BspCNI	CTCAG	2 cut(s)	339, 656
BspFNI	CGCG	1 cut(s)	997
BspPI	GGATC	3 cut(s)	361, 643, 834
BsrI	ACTGG	2 cut(s)	32, 889
BssECI	CCNNGG	3 cut(s)	291, 391, 756
BssMI	GATC	5 cut(s)	318, 353, 520, 635, 826
BssT1I	CCWWGG	3 cut(s)	291, 391, 756
Bst2UI	CCWGG	2 cut(s)	602, 824
Bst4CI	ACNGT	2 cut(s)	249, 568
Bst6I	CTCTTC	2 cut(s)	494, 963
BstC8I	GCNNGC	2 cut(s)	190, 326
BstDEI	CTNAG	8 cut(s)	161, 223, 347, 460, 514, 607, 643, 809
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	997
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	5 cut(s)	321, 356, 523, 638, 829
BstMAI	GTCTC	3 cut(s)	755, 870, 978
BstMBI	GATC	5 cut(s)	318, 353, 520, 635, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 309, 321
BstNI	CCWGG	2 cut(s)	602, 824
BstSCI	CCNGG	2 cut(s)	600, 822
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	987
BstUI	CGCG	1 cut(s)	997
BstV1I	GCAGC	3 cut(s)	324, 732, 1045
BstV2I	GAAGAC	3 cut(s)	382, 654, 725
BstX2I	RGATCY	2 cut(s)	635, 826
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	2 cut(s)	635, 826
Bsu36I	CCTNAGG	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	780
BtsCI	GGATG	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	68, 204
Cac8I	GCNNGC	2 cut(s)	190, 326
CfoI	GCGC	1 cut(s)	997
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	147
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	8 cut(s)	161, 223, 347, 460, 514, 607, 643, 809
DpnI	GATC	5 cut(s)	320, 355, 522, 637, 828
DpnII	GATC	5 cut(s)	318, 353, 520, 635, 826
DraIII	CACNNNGTG	1 cut(s)	991
Eam1104I	CTCTTC	2 cut(s)	494, 963
EarI	CTCTTC	2 cut(s)	494, 963
Eco130I	CCWWGG	3 cut(s)	291, 391, 756
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	600, 822
EcoT14I	CCWWGG	3 cut(s)	291, 391, 756
ErhI	CCWWGG	3 cut(s)	291, 391, 756
Esp3I	CGTCTC	1 cut(s)	978
FaeI	CATG	1 cut(s)	150
FatI	CATG	1 cut(s)	146
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	313, 721, 1034
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	313, 721, 1034
FspBI	CTAG	8 cut(s)	152, 332, 524, 773, 789, 815, 869, 920
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	3 cut(s)	313, 721, 1034
GsuI	CTGGAG	3 cut(s)	111, 870, 872
HaeIII	GGCC	1 cut(s)	780
HhaI	GCGC	1 cut(s)	997
Hin1II	CATG	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HincII	GTYRAC	2 cut(s)	449, 558
HindII	GTYRAC	2 cut(s)	449, 558
HinfI	GANTC	5 cut(s)	229, 336, 385, 852, 964
HpaI	GTTAAC	1 cut(s)	558
HphI	GGTGA	2 cut(s)	293, 530
Hpy166II	GTNNAC	3 cut(s)	449, 558, 985
Hpy188I	TCNGA	4 cut(s)	374, 646, 861, 963
Hpy188III	TCNNGA	6 cut(s)	128, 737, 773, 849, 869, 1050
Hpy8I	GTNNAC	3 cut(s)	449, 558, 985
HpyAV	CCTTC	3 cut(s)	516, 770, 1023
HpyCH4III	ACNGT	2 cut(s)	249, 568
HpyCH4IV	ACGT	1 cut(s)	1018
HpyCH4V	TGCA	4 cut(s)	270, 328, 985, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 309, 321
HpyF3I	CTNAG	8 cut(s)	161, 223, 347, 460, 514, 607, 643, 809
HpySE526I	ACGT	1 cut(s)	1018
Hsp92II	CATG	1 cut(s)	150
HspAI	GCGC	1 cut(s)	995
Ksp22I	TGATCA	1 cut(s)	318
KspAI	GTTAAC	1 cut(s)	558
Kzo9I	GATC	5 cut(s)	318, 353, 520, 635, 826
Lsp1109I	GCAGC	3 cut(s)	324, 732, 1045
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	8 cut(s)	152, 332, 524, 773, 789, 815, 869, 920
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	3 cut(s)	34, 281, 407
MalI	GATC	5 cut(s)	320, 355, 522, 637, 828
MboI	GATC	5 cut(s)	318, 353, 520, 635, 826
MboII	GAAGA	7 cut(s)	50, 276, 387, 481, 659, 725, 950
MflI	RGATCY	2 cut(s)	635, 826
MhlI	GDGCHC	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	861
MmeI	TCCRAC	5 cut(s)	386, 613, 858, 956, 1039
MnlI	CCTC	4 cut(s)	130, 194, 229, 489
MseI	TTAA	4 cut(s)	81, 542, 557, 591
MspR9I	CCNGG	2 cut(s)	602, 824
MvaI	CCWGG	2 cut(s)	602, 824
MvnI	CGCG	1 cut(s)	997
MwoI	GCNNNNNNNGC	3 cut(s)	215, 309, 321
NdeII	GATC	5 cut(s)	318, 353, 520, 635, 826
NlaIII	CATG	1 cut(s)	150
NmuCI	GTSAC	3 cut(s)	34, 281, 407
PcsI	WCGNNNNNNNCGW	1 cut(s)	1024
PfeI	GAWTC	4 cut(s)	229, 336, 385, 964
PflMI	CCANNNNNTGG	1 cut(s)	938
PfoI	TCCNGGA	2 cut(s)	600, 822
PkrI	GCNGC	3 cut(s)	314, 722, 1035
PleI	GAGTC	1 cut(s)	860
PpsI	GAGTC	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	600, 822
PspGI	CCWGG	2 cut(s)	600, 822
PsuI	RGATCY	2 cut(s)	635, 826
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	81, 542, 557, 591
SatI	GCNGC	3 cut(s)	313, 721, 1034
Sau3AI	GATC	5 cut(s)	318, 353, 520, 635, 826
SchI	GAGTC	1 cut(s)	861
ScrFI	CCNGG	2 cut(s)	602, 824
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	169, 307
SmoI	CTYRAG	2 cut(s)	169, 307
SspMI	CTAG	8 cut(s)	152, 332, 524, 773, 789, 815, 869, 920
StyD4I	CCNGG	2 cut(s)	600, 822
StyI	CCWWGG	3 cut(s)	291, 391, 756
TaaI	ACNGT	2 cut(s)	249, 568
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	229, 336, 385, 964
Tru1I	TTAA	4 cut(s)	81, 542, 557, 591
Tru9I	TTAA	4 cut(s)	81, 542, 557, 591
TscAI	CASTG	2 cut(s)	68, 211
TseFI	GTSAC	3 cut(s)	34, 281, 407
TseI	GCWGC	3 cut(s)	312, 720, 1033
Tsp45I	GTSAC	3 cut(s)	34, 281, 407
TspDTI	ATGAA	4 cut(s)	16, 453, 783, 870
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	68, 211
Van91I	CCANNNNNTGG	1 cut(s)	938
VneI	GTGCAC	1 cut(s)	983
XapI	RAATTY	2 cut(s)	538, 927
XbaI	TCTAGA	2 cut(s)	772, 868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60
XspI	CTAG	8 cut(s)	152, 332, 524, 773, 789, 815, 869, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.