Rroxscaffold_1G00040170

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006905
Physical Location & Seq
Reverse (-)
57782162 .. 57783663
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040170.1

Sequence Viewer

Length: 1488 bp
ATGGCAGGTACTATACCAAATGAGATTGGTGATCTTCCAAAATTGGAGTTTTTAGCACTCAATTTAAACAATCTCAATGGTCTCATCCCATCCAGAGTCTTCAATATGTCCACAATACAAACACTCTCACTTACTCTTAATCACCTCTCGGGTAGTCTCCCTGCAAACATCGGACCTGGGGTTCCAAACTTGCAAGGCTTTTTTGTATCAATGAATGAACTTAGCGGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCAGAAAGCTAGGCATGGCCGTTAACTCGTTTTCAGGGTTTATACCTAGCACAGTTTGTGCCTTAGAAAACCTTCAGTCGCTTAACTTACATGAAAACCATTTGACCATCGATACTTCTAGTGCAGAAGTAAACTTTCTCTCTTGTTTGGCTACTCTTAGAGATCTGAGGAGAGTACAGTTGTCCAACAATCCATTAAACACCAGCCTTCCCGCTTCCAATAGGAATCTCACTAGACTAGAATATATGGATTTAAGCAATTGCAATATGAGGGGTAGCATTCCCAGTGATATTGGTAATATGAGCAGCTTGATAGCCTTATACCTGAGATACAATCAATTGAGTGGACCAATTCAAACTACAATGGGAAGCCTAAAGAATCTCCAACGGTTGTACTTGAATGATAACCAACTGCAAGGATACATCCCGTATGAACTCTGTCAACTAGAAAACCTAGTCGATTTACAATTGGGTGGTAATCAACTCTCTGGTTCTATACCTTCCTGTTTAGGAGATCTAGCCACAGCACTAAGAACTCTATCATTGAACTCCAATTTGTTAAATTCCACTATACCATCTACCTTGTGGAGACTCCAATATATCCTCCATGTAAATTTATCGTCCAATGCTCTAATTGGCCATCTCTCTGAAGATATTGGTAATTTGAAAGTTGTGACAGATATGGATTTATCAAGCAACCATTTATCTGGGATTGCACCAGGAAGCATTGGAGGCCTTCAAGATTTGGTCAAACTCTCCTTGGCAAATAACAGTTTTGAAGGCCCTATTCCTACTTCATTTGGCAACATGCTAAGCCTGGAACTCTTGGATTTATCCCAAAACAATCTATCTGGGGAGATTCCAGAGTCTCTAGAAGCACTCTTGCGCCTCAGCTATTTGAATCTGTCTTTCAACAGACTCAGCGGAGAAATTCCATCAGGTGGGCCTTTCAGAAACTTCTCTGCTCAATCATTTGTCTCAAATGGTGCACTTTGTGGCGCACCCCAACTGCATATTGCAGCATGCAAAAACAGAACAATCAAGCTGCATTCAACTAAAGCTAGAGGATCCATCTTGAAGGATCATGTCAGTGATACTCTTAGTGACCTGTATATCGATGTTGATATTATGCATAAAAAGGCATGTGGAAGTTCCAAGACAGACTACCATGTGGCCTCAACTTCAATGGAGAAGAGTTTCATATCAAGAGCTTCGAACTGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

495

Amino Acids

53.53

Weight (kDa)

6.13

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 133 - 267 1.8e-08 Leucine-rich repeat region
LRR_8 PF13855 191 - 249 9.5e-08 Leucine rich repeat
LRR_14 PF23598 263 - 394 1.2e-08 Leucine-rich repeat region
LRR_8 PF13855 291 - 345 7.3e-06 Leucine rich repeat
LRR_8 PF13855 336 - 394 4.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1202
AciI CCGC 3 cut(s) 225, 474, 1185
AclWI GGATC 3 cut(s) 1323, 1336, 1350
AcoI YGGCCR 2 cut(s) 279, 898
AcsI RAATTY 3 cut(s) 823, 874, 1191
AcuI CTGAAG 2 cut(s) 320, 930
AdeI CACNNNGTG 1 cut(s) 1256
AfaI GTAC 3 cut(s) 10, 438, 656
AfiI CCNNNNNNNGG 1 cut(s) 1202
AjnI CCWGG 3 cut(s) 175, 979, 1077
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 6 cut(s) 271, 570, 1155, 1306, 1322, 1472
AluI AGCT 6 cut(s) 271, 570, 1155, 1306, 1322, 1472
Alw21I GWGCWC 1 cut(s) 1252
Alw26I GTCTC 5 cut(s) 86, 161, 844, 1134, 1243
Alw44I GTGCAC 1 cut(s) 1248
AlwI GGATC 3 cut(s) 1323, 1336, 1350
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 6 cut(s) 279, 898, 994, 1042, 1205, 1434
ApaLI GTGCAC 1 cut(s) 1248
ApeKI GCWGC 3 cut(s) 567, 1280, 1306
ApoI RAATTY 3 cut(s) 823, 874, 1191
Asp700I GAANNNNTTC 2 cut(s) 333, 1457
AspLEI GCGC 2 cut(s) 1149, 1262
AspS9I GGNCC 4 cut(s) 173, 608, 1043, 1205
AsuHPI GGTGA 2 cut(s) 41, 134
AsuII TTCGAA 1 cut(s) 1475
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 2 cut(s) 173, 608
BaeGI GKGCMC 1 cut(s) 1252
BalI TGGCCA 1 cut(s) 900
BamHI GGATCC 1 cut(s) 1328
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 1252
BbvCI CCTCAGC 1 cut(s) 1151
BbvI GCAGC 3 cut(s) 579, 1292, 1293
BccI CCATC 6 cut(s) 97, 377, 844, 909, 1204, 1340
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 3 cut(s) 177, 981, 1079
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 5 cut(s) 86, 161, 844, 1134, 1243
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 2 cut(s) 424, 775
BisI GCNGC 3 cut(s) 568, 1281, 1307
BlpI GCTNAGC 1 cut(s) 1073
BlsI GCNGC 3 cut(s) 569, 1282, 1308
Bme1390I CCNGG 3 cut(s) 177, 981, 1079
Bme18I GGWCC 2 cut(s) 173, 608
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 4 cut(s) 173, 608, 1043, 1205
BmiI GGNNCC 2 cut(s) 183, 1330
BmrFI CCNGG 3 cut(s) 177, 981, 1079
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 1151
Bpu1102I GCTNAGC 1 cut(s) 1073
Bpu14I TTCGAA 1 cut(s) 1475
Bsa29I ATCGAT 2 cut(s) 372, 1377
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 176, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 1202
Bse1I ACTGG 1 cut(s) 546
BseBI CCWGG 3 cut(s) 177, 981, 1079
BseCI ATCGAT 2 cut(s) 372, 1377
BseDI CCNNGG 2 cut(s) 176, 1020
BseGI GGATG 3 cut(s) 84, 89, 684
BseLI CCNNNNNNNGG 1 cut(s) 1202
BseMII CTCAG 4 cut(s) 419, 578, 1165, 1195
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 1252
BseXI GCAGC 3 cut(s) 579, 1292, 1293
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 6 cut(s) 281, 900, 996, 1044, 1207, 1436
BshVI ATCGAT 2 cut(s) 372, 1377
BsiHKAI GWGCWC 1 cut(s) 1252
BsiHKCI CYCGRG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 1202
BsmAI GTCTC 5 cut(s) 86, 161, 844, 1134, 1243
BsmI GAATGC 2 cut(s) 540, 1309
BsnI GGCC 6 cut(s) 281, 900, 996, 1044, 1207, 1436
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 1475
Bsp1286I GDGCHC 1 cut(s) 1252
Bsp143I GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
Bsp1720I GCTNAGC 1 cut(s) 1073
BspACI CCGC 3 cut(s) 225, 474, 1185
BspANI GGCC 6 cut(s) 281, 900, 996, 1044, 1207, 1436
BspCNI CTCAG 4 cut(s) 420, 579, 1164, 1194
BspDI ATCGAT 2 cut(s) 372, 1377
BspLI GGNNCC 2 cut(s) 183, 1330
BspPI GGATC 3 cut(s) 1323, 1336, 1350
BspT104I TTCGAA 1 cut(s) 1475
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 546
BssECI CCNNGG 2 cut(s) 176, 1020
BssMI GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
BssT1I CCWWGG 1 cut(s) 1020
Bst2UI CCWGG 3 cut(s) 177, 981, 1079
Bst4CI ACNGT 5 cut(s) 316, 441, 651, 1034, 1481
Bst6I CTCTTC 1 cut(s) 1448
BstBI TTCGAA 1 cut(s) 1475
BstC8I GCNNGC 1 cut(s) 1285
BstF5I GGATG 3 cut(s) 84, 89, 684
BstHHI GCGC 2 cut(s) 1149, 1262
BstKTI GATC 6 cut(s) 34, 264, 427, 778, 1331, 1345
BstMAI GTCTC 5 cut(s) 86, 161, 844, 1134, 1243
BstMBI GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
BstMWI GCNNNNNNNGC 1 cut(s) 993
BstNI CCWGG 3 cut(s) 177, 981, 1079
BstNSI RCATGY 3 cut(s) 1072, 1287, 1407
BstSCI CCNGG 3 cut(s) 175, 979, 1077
BstSLI GKGCMC 1 cut(s) 1252
BstV1I GCAGC 3 cut(s) 579, 1292, 1293
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 3 cut(s) 424, 775, 1328
BstXI CCANNNNNNTGG 1 cut(s) 968
BstYI RGATCY 3 cut(s) 424, 775, 1328
Bsu15I ATCGAT 2 cut(s) 372, 1377
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 6 cut(s) 281, 900, 996, 1044, 1207, 1436
BsuTUI ATCGAT 2 cut(s) 372, 1377
BtsCI GGATG 3 cut(s) 84, 89, 684
BtsIMutI CAGTG 2 cut(s) 553, 1357
Cac8I GCNNGC 1 cut(s) 1285
CfoI GCGC 2 cut(s) 1149, 1262
Cfr13I GGNCC 4 cut(s) 173, 608, 1043, 1205
ClaI ATCGAT 2 cut(s) 372, 1377
Csp6I GTAC 3 cut(s) 9, 437, 655
CviAII CATG 8 cut(s) 277, 353, 869, 1069, 1284, 1346, 1404, 1430
CviQI GTAC 3 cut(s) 9, 437, 655
DpnI GATC 6 cut(s) 33, 263, 426, 777, 1330, 1344
DpnII GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
DraI TTTAAA 1 cut(s) 66
DraIII CACNNNGTG 1 cut(s) 1256
EaeI YGGCCR 2 cut(s) 279, 898
Eam1104I CTCTTC 1 cut(s) 1448
EarI CTCTTC 1 cut(s) 1448
Eco130I CCWWGG 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 173, 608
Eco57I CTGAAG 2 cut(s) 320, 930
Eco88I CYCGRG 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRII CCWGG 3 cut(s) 175, 979, 1077
EcoT14I CCWWGG 1 cut(s) 1020
EcoT22I ATGCAT 1 cut(s) 1395
ErhI CCWWGG 1 cut(s) 1020
FaeI CATG 8 cut(s) 280, 356, 872, 1072, 1287, 1349, 1407, 1433
FatI CATG 8 cut(s) 276, 352, 868, 1068, 1283, 1345, 1403, 1429
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 568, 1281, 1307
FokI GGATG 3 cut(s) 71, 76, 671
Fsp4HI GCNGC 3 cut(s) 568, 1281, 1307
GlaI GCGC 2 cut(s) 1148, 1261
GluI GCNGC 3 cut(s) 568, 1281, 1307
HaeIII GGCC 6 cut(s) 281, 900, 996, 1044, 1207, 1436
HhaI GCGC 2 cut(s) 1149, 1262
Hin1II CATG 8 cut(s) 280, 356, 872, 1072, 1287, 1349, 1407, 1433
Hin6I GCGC 2 cut(s) 1147, 1260
HinP1I GCGC 2 cut(s) 1147, 1260
HincII GTYRAC 2 cut(s) 286, 704
HindII GTYRAC 2 cut(s) 286, 704
HinfI GANTC 8 cut(s) 96, 487, 640, 852, 1120, 1127, 1162, 1179
HpaI GTTAAC 1 cut(s) 286
HphI GGTGA 2 cut(s) 41, 134
Hpy166II GTNNAC 6 cut(s) 111, 286, 394, 608, 704, 1250
Hpy188I TCNGA 5 cut(s) 173, 266, 429, 910, 1214
Hpy188III TCNNGA 6 cut(s) 93, 1001, 1124, 1133, 1336, 1467
Hpy8I GTNNAC 6 cut(s) 111, 286, 394, 608, 704, 1250
HpyAV CCTTC 6 cut(s) 344, 479, 771, 1007, 1034, 1333
HpyCH4III ACNGT 5 cut(s) 316, 441, 651, 1034, 1481
HpyF10VI GCNNNNNNNGC 1 cut(s) 993
Hsp92II CATG 8 cut(s) 280, 356, 872, 1072, 1287, 1349, 1407, 1433
HspAI GCGC 2 cut(s) 1147, 1260
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
Lsp1109I GCAGC 3 cut(s) 579, 1292, 1293
MaeIII GTNAC 3 cut(s) 934, 1364, 1481
MalI GATC 6 cut(s) 33, 263, 426, 777, 1330, 1344
MboI GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
MboII GAAGA 4 cut(s) 26, 91, 923, 1465
MfeI CAATTG 3 cut(s) 520, 599, 728
MflI RGATCY 3 cut(s) 424, 775, 1328
MhlI GDGCHC 1 cut(s) 1252
MlsI TGGCCA 1 cut(s) 900
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 4 cut(s) 105, 846, 1136, 1173
MmeI TCCRAC 2 cut(s) 471, 670
MnlI CCTC 8 cut(s) 155, 423, 525, 875, 986, 1160, 1319, 1447
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 1395
MroXI GAANNNNTTC 2 cut(s) 333, 1457
MscI TGGCCA 1 cut(s) 900
MseI TTAA 7 cut(s) 65, 138, 285, 345, 458, 515, 821
MslI CAYNNNNRTG 1 cut(s) 1350
Msp20I TGGCCA 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 1185
MspR9I CCNGG 3 cut(s) 177, 981, 1079
MunI CAATTG 3 cut(s) 520, 599, 728
Mva1269I GAATGC 2 cut(s) 540, 1309
MvaI CCWGG 3 cut(s) 177, 981, 1079
MwoI GCNNNNNNNGC 1 cut(s) 993
NdeII GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
NlaIII CATG 8 cut(s) 280, 356, 872, 1072, 1287, 1349, 1407, 1433
NlaIV GGNNCC 2 cut(s) 183, 1330
NmuCI GTSAC 3 cut(s) 934, 1364, 1481
NsiI ATGCAT 1 cut(s) 1395
NspI RCATGY 3 cut(s) 1072, 1287, 1407
NspV TTCGAA 1 cut(s) 1475
PaeI GCATGC 1 cut(s) 1287
PceI AGGCCT 1 cut(s) 996
PctI GAATGC 2 cut(s) 540, 1309
PdmI GAANNNNTTC 2 cut(s) 333, 1457
PfeI GAWTC 4 cut(s) 487, 640, 1120, 1162
PflMI CCANNNNNTGG 1 cut(s) 1202
PkrI GCNGC 3 cut(s) 569, 1282, 1308
PleI GAGTC 4 cut(s) 104, 846, 1135, 1173
PpsI GAGTC 4 cut(s) 104, 846, 1135, 1173
Psp6I CCWGG 3 cut(s) 175, 979, 1077
PspGI CCWGG 3 cut(s) 175, 979, 1077
PspN4I GGNNCC 2 cut(s) 183, 1330
PspPI GGNCC 4 cut(s) 173, 608, 1043, 1205
PsuI RGATCY 3 cut(s) 424, 775, 1328
RsaI GTAC 3 cut(s) 10, 438, 656
RsaNI GTAC 3 cut(s) 9, 437, 655
RseI CAYNNNNRTG 1 cut(s) 1350
SaqAI TTAA 7 cut(s) 65, 138, 285, 345, 458, 515, 821
SatI GCNGC 3 cut(s) 568, 1281, 1307
Sau3AI GATC 6 cut(s) 31, 261, 424, 775, 1328, 1342
Sau96I GGNCC 4 cut(s) 173, 608, 1043, 1205
SchI GAGTC 4 cut(s) 105, 846, 1136, 1173
ScrFI CCNGG 3 cut(s) 177, 981, 1079
SduI GDGCHC 1 cut(s) 1252
SfuI TTCGAA 1 cut(s) 1475
SinI GGWCC 2 cut(s) 173, 608
SmiMI CAYNNNNRTG 1 cut(s) 1350
SphI GCATGC 1 cut(s) 1287
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 3 cut(s) 225, 474, 1185
StuI AGGCCT 1 cut(s) 996
StyD4I CCNGG 3 cut(s) 175, 979, 1077
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 5 cut(s) 316, 441, 651, 1034, 1481
TaqI TCGA 4 cut(s) 372, 720, 1377, 1475
TatI WGTACW 2 cut(s) 436, 654
TfiI GAWTC 4 cut(s) 487, 640, 1120, 1162
Tru1I TTAA 7 cut(s) 65, 138, 285, 345, 458, 515, 821
Tru9I TTAA 7 cut(s) 65, 138, 285, 345, 458, 515, 821
TscAI CASTG 2 cut(s) 553, 1357
TseFI GTSAC 3 cut(s) 934, 1364, 1481
TseI GCWGC 3 cut(s) 567, 1280, 1306
Tsp45I GTSAC 3 cut(s) 934, 1364, 1481
TspDTI ATGAA 7 cut(s) 227, 231, 232, 369, 708, 1047, 1450
TspRI CASTG 2 cut(s) 553, 1357
Van91I CCANNNNNTGG 1 cut(s) 1202
VneI GTGCAC 1 cut(s) 1248
VpaK11BI GGWCC 2 cut(s) 173, 608
XapI RAATTY 3 cut(s) 823, 874, 1191
XbaI TCTAGA 1 cut(s) 1132
XceI RCATGY 3 cut(s) 1072, 1287, 1407
XcmI CCANNNNNNNNNTGG 1 cut(s) 843
XmnI GAANNNNTTC 2 cut(s) 333, 1457
Zsp2I ATGCAT 1 cut(s) 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.