Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001878.1

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1521

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1156 bp

tccatatttctttcaatctactctcgggtggcctccccaagtgctttatatagcagtaaataacctcagtggagtgatcccaaactttatctccaatgcttctaagctcgtcaagctagacatggggtctaattcattttccagcttcattccagtcacgctttgtaccttaccaattcttcagtggcctctcttatcgcttaacaatttgaccattgatacctccactccagaagcaaacattttctcatgtttagccaatcttagaaacttgagtatgttgaacctcgcaggcaatcctttgaacactgctctccctgcctccttagggaatctatctacatcactacagtatattgattttagaagatgcaacttcaagggtgacatccccaaggagataggcaacttgagcagcttgatcagcttgcaactaggattcaatcaactgagtggatcacttccaacgacactcggaagactacggaatctccaaggtctgtatttgagtgacaacaaattggtaggctatatcccagatgaactctgtcaactatacaacttagctgatatggaaatgcctcataatctcttctctggttctataccttcctgcttaggtgatctagccacatcactaaatttaatgtccaaattgttaacttcgacagtatcatctttcttgtggcaacttaaatatatcctggacttagacttgtcatctaattctttggttggatctctctcagaagacattggtaatttgaaagttgtagcacatatagatttgtcaaacaaccatttctctagttctataccaagcagcattggggatcttcaagatttgtttagtctctccttggcaaataataatctagaaggccatagtcctagttcatttgggaactcgctaagcctagaactcctggatctatccaacaatagtctttctggagtcattccgaagtctctagaagcactttcatatctccagtatctcaatttctctttcaacaaattgctaggagaaattccaacaagtggttatttcaaaacttctcttccgaatctttcgtctcaaatggtgcactctgtggcgcgacccgactgcttgttccaacgtgcaaaacgaaggcagctaacagatatttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

41.88

Weight (kDa)

5.52

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1041
AccII	CGCG	1 cut(s)	1100
AclWI	GGATC	5 cut(s)	71, 464, 746, 841, 937
AcsI	RAATTY	2 cut(s)	641, 1030
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	1094
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	328, 1041
AgsI	TTSAA	9 cut(s)	15, 284, 305, 380, 443, 767, 840, 1013, 1052
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	703, 925
AluBI	AGCT	7 cut(s)	107, 116, 145, 418, 427, 567, 1139
AluI	AGCT	7 cut(s)	107, 116, 145, 418, 427, 567, 1139
Alw21I	GWGCWC	1 cut(s)	1090
Alw26I	GTCTC	3 cut(s)	858, 973, 1081
Alw44I	GTGCAC	1 cut(s)	1086
AlwI	GGATC	5 cut(s)	71, 464, 746, 841, 937
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	3 cut(s)	30, 186, 881
ApaLI	GTGCAC	1 cut(s)	1086
ApeKI	GCWGC	3 cut(s)	415, 823, 1136
ApoI	RAATTY	2 cut(s)	641, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	1059, 1091
AspLEI	GCGC	1 cut(s)	1100
AsuHPI	GGTGA	2 cut(s)	396, 633
AvaI	CYCGRG	1 cut(s)	24
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	1090
BbsI	GAAGAC	2 cut(s)	485, 757
Bbv12I	GWGCWC	1 cut(s)	1090
BbvI	GCAGC	3 cut(s)	427, 835, 1148
BcgI	CGANNNNNNTGC	2 cut(s)	1090, 1124
BciT130I	CCWGG	2 cut(s)	705, 927
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	858, 973, 1081
BfaI	CTAG	9 cut(s)	117, 435, 627, 808, 876, 892, 918, 972, 1023
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	3 cut(s)	416, 824, 1137
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	3 cut(s)	417, 825, 1138
Bme1390I	CCNGG	2 cut(s)	705, 927
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	705, 927
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	2 cut(s)	485, 757
BpmI	CTGGAG	3 cut(s)	214, 973, 975
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	293, 431
BsaJI	CCNNGG	3 cut(s)	394, 494, 859
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 212, 242, 475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 1041
Bse1I	ACTGG	2 cut(s)	153, 992
Bse21I	CCTNAGG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	705, 927
BseDI	CCNNGG	3 cut(s)	394, 494, 859
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	328, 1041
BseMII	CTCAG	3 cut(s)	80, 441, 760
BseNI	ACTGG	2 cut(s)	153, 992
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	3 cut(s)	427, 835, 1148
Bsh1236I	CGCG	1 cut(s)	1100
BshFI	GGCC	3 cut(s)	32, 188, 883
BsiHKAI	GWGCWC	1 cut(s)	1090
BsiHKCI	CYCGRG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	328, 1041
BsmAI	GTCTC	3 cut(s)	858, 973, 1081
BsmBI	CGTCTC	1 cut(s)	1081
BsnI	GGCC	3 cut(s)	32, 188, 883
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	1090
Bsp143I	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
Bsp1720I	GCTNAGC	1 cut(s)	912
BspANI	GGCC	3 cut(s)	32, 188, 883
BspCNI	CTCAG	3 cut(s)	79, 442, 759
BspFNI	CGCG	1 cut(s)	1100
BspPI	GGATC	5 cut(s)	71, 464, 746, 841, 937
BsrI	ACTGG	2 cut(s)	153, 992
BssECI	CCNNGG	3 cut(s)	394, 494, 859
BssMI	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
BssT1I	CCWWGG	3 cut(s)	394, 494, 859
Bst2UI	CCWGG	2 cut(s)	705, 927
Bst4CI	ACNGT	2 cut(s)	352, 671
Bst6I	CTCTTC	2 cut(s)	597, 1066
BstC8I	GCNNGC	2 cut(s)	293, 429
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	1100
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	7 cut(s)	79, 424, 459, 626, 741, 836, 932
BstMAI	GTCTC	3 cut(s)	858, 973, 1081
BstMBI	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 318, 412, 424
BstNI	CCWGG	2 cut(s)	705, 927
BstSCI	CCNGG	2 cut(s)	703, 925
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	1090
BstUI	CGCG	1 cut(s)	1100
BstV1I	GCAGC	3 cut(s)	427, 835, 1148
BstV2I	GAAGAC	2 cut(s)	485, 757
BstX2I	RGATCY	3 cut(s)	738, 833, 929
BstYI	RGATCY	3 cut(s)	738, 833, 929
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	32, 188, 883
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	74, 189, 307
Cac8I	GCNNGC	2 cut(s)	293, 429
CfoI	GCGC	1 cut(s)	1100
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	122, 250
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	7 cut(s)	78, 423, 458, 625, 740, 835, 931
DpnII	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
DraIII	CACNNNGTG	1 cut(s)	1094
DriI	GACNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	597, 1066
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	2 cut(s)	597, 1066
Eco130I	CCWWGG	3 cut(s)	394, 494, 859
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	703, 925
EcoT14I	CCWWGG	3 cut(s)	394, 494, 859
ErhI	CCWWGG	3 cut(s)	394, 494, 859
Esp3I	CGTCTC	1 cut(s)	1081
FaeI	CATG	2 cut(s)	125, 253
FatI	CATG	2 cut(s)	121, 249
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	416, 824, 1137
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	416, 824, 1137
FspBI	CTAG	9 cut(s)	117, 435, 627, 808, 876, 892, 918, 972, 1023
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	3 cut(s)	416, 824, 1137
GsuI	CTGGAG	3 cut(s)	214, 973, 975
HaeIII	GGCC	3 cut(s)	32, 188, 883
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	2 cut(s)	125, 253
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	2 cut(s)	552, 661
HindII	GTYRAC	2 cut(s)	552, 661
HinfI	GANTC	5 cut(s)	332, 439, 488, 955, 1067
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	2 cut(s)	396, 633
Hpy166II	GTNNAC	3 cut(s)	552, 661, 1088
Hpy188I	TCNGA	4 cut(s)	477, 749, 964, 1066
Hpy188III	TCNNGA	6 cut(s)	231, 840, 876, 952, 972, 1153
Hpy8I	GTNNAC	3 cut(s)	552, 661, 1088
HpyAV	CCTTC	3 cut(s)	619, 873, 1126
HpyCH4III	ACNGT	2 cut(s)	352, 671
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	4 cut(s)	373, 431, 1088, 1125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 318, 412, 424
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	2 cut(s)	125, 253
HspAI	GCGC	1 cut(s)	1098
Ksp22I	TGATCA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
Lsp1109I	GCAGC	3 cut(s)	427, 835, 1148
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	9 cut(s)	117, 435, 627, 808, 876, 892, 918, 972, 1023
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	3 cut(s)	155, 384, 510
MalI	GATC	7 cut(s)	78, 423, 458, 625, 740, 835, 931
MboI	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
MboII	GAAGA	7 cut(s)	171, 379, 490, 584, 762, 828, 1053
MflI	RGATCY	3 cut(s)	738, 833, 929
MhlI	GDGCHC	1 cut(s)	1090
MlyI	GAGTC	1 cut(s)	964
MmeI	TCCRAC	5 cut(s)	489, 716, 961, 1059, 1142
MnlI	CCTC	7 cut(s)	43, 75, 199, 233, 297, 332, 592
MseI	TTAA	4 cut(s)	202, 645, 660, 694
MspR9I	CCNGG	2 cut(s)	705, 927
MvaI	CCWGG	2 cut(s)	705, 927
MvnI	CGCG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	4 cut(s)	113, 318, 412, 424
NdeII	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
NlaIII	CATG	2 cut(s)	125, 253
NmuCI	GTSAC	3 cut(s)	155, 384, 510
PcsI	WCGNNNNNNNCGW	1 cut(s)	1127
PfeI	GAWTC	4 cut(s)	332, 439, 488, 1067
PflMI	CCANNNNNTGG	1 cut(s)	1041
PfoI	TCCNGGA	2 cut(s)	703, 925
PkrI	GCNGC	3 cut(s)	417, 825, 1138
PleI	GAGTC	1 cut(s)	963
PpsI	GAGTC	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	703, 925
PspGI	CCWGG	2 cut(s)	703, 925
PsuI	RGATCY	3 cut(s)	738, 833, 929
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	202, 645, 660, 694
SatI	GCNGC	3 cut(s)	416, 824, 1137
Sau3AI	GATC	7 cut(s)	76, 421, 456, 623, 738, 833, 929
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	2 cut(s)	705, 927
SduI	GDGCHC	1 cut(s)	1090
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	272, 410
SmoI	CTYRAG	2 cut(s)	272, 410
SspMI	CTAG	9 cut(s)	117, 435, 627, 808, 876, 892, 918, 972, 1023
StyD4I	CCNGG	2 cut(s)	703, 925
StyI	CCWWGG	3 cut(s)	394, 494, 859
TaaI	ACNGT	2 cut(s)	352, 671
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	1 cut(s)	666
TfiI	GAWTC	4 cut(s)	332, 439, 488, 1067
Tru1I	TTAA	4 cut(s)	202, 645, 660, 694
Tru9I	TTAA	4 cut(s)	202, 645, 660, 694
TscAI	CASTG	3 cut(s)	74, 189, 314
TseFI	GTSAC	3 cut(s)	155, 384, 510
TseI	GCWGC	3 cut(s)	415, 823, 1136
Tsp45I	GTSAC	3 cut(s)	155, 384, 510
TspDTI	ATGAA	5 cut(s)	124, 137, 556, 886, 973
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	74, 189, 314
Van91I	CCANNNNNTGG	1 cut(s)	1041
VneI	GTGCAC	1 cut(s)	1086
XapI	RAATTY	2 cut(s)	641, 1030
XbaI	TCTAGA	2 cut(s)	875, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	9 cut(s)	117, 435, 627, 808, 876, 892, 918, 972, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.