Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

36813426 .. 36814985

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1277300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAATAATCTCAGTGGACTAATCCCCAGCTTTATCTCCAATGGCTCTAAGCTCACGAAGCTAGATATGTCTTCAAACTCATTTTCTGGGTTTATTCCTAACAATTTATGTGCCTTAACAAACCTTGAGTACCTTAGCTTACTCAAAAACAATTTAACGATTGATACTTCAACCCTAGAAGTAAACATCCTTTCTTGTTTGGGTAATCTTCGAAATCTTTGGGGACTCTACTTGTCTGACAATCCATTAAATGCCATTCTTCCTGCTTCCTTTGGAAATTTGTCTACGTCGCTTGAATATCTTCAATTAGGCTTTTGCAGTTTGAGGGGTAGCATAACTTCAGGTCTCAATTTGTATGATAACAAGTTGCAAGGATACATCCCAGGTGAACTTTGTCAACTGGACAACCTAGTTGAATTGAATATCAGTGGTAATCAACTCTCTGGTTCCGTACCTTCCTGCCTAGGTAATCTAACTGCAAGACGTAGAAAGATATCATTAGAGTCCAATTTGTTAACTTCCACAATACCACCTACCTTATGGAAGCTTTCATATATATTGATCCTAGACTTGTCATCCAATTCACTCGTTGGTCCTCTCTCAGAAGATGTTGGAAAACTGAAAGTTGTGACAGAAGTGAATTTATCAAATAACCATTTATATGGTGCTATACCAAGCAGTATGAGTGGACTCCAGGATTTGGTTAGTCTCTCCTTGGAAAATAATAATTTAGAACGTCATATCCCCAGTTCATTTGGAAACTTGCTAAGCCTGGAACTCTTGGATCTATCCAAAAACAATCTTTCCGGAGTAGTTCCAAAGTCTCTTGAAGCACTCATTCATCTCAAGTATCTGAATTTGTCTTTCAACACACTCCAAGGTGAAATTCCTACAGGTGGACCTTTTCAAAACCTCTCAATCATTTGTCCCGAATGGTGCACTCTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

317

Amino Acids

34.33

Weight (kDa)

5.09

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	180 - 292	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	234 - 292	3.5e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	806
AclWI	GGATC	2 cut(s)	556, 792
AcsI	RAATTY	4 cut(s)	277, 640, 856, 885
AcuI	CTGAAG	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	945
AfaI	GTAC	2 cut(s)	131, 453
AfiI	CCNNNNNNNGG	2 cut(s)	700, 896
AgsI	TTSAA	9 cut(s)	75, 171, 296, 305, 416, 421, 830, 868, 908
AjnI	CCWGG	3 cut(s)	382, 693, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AloI	GAACNNNNNNTCC	2 cut(s)	726, 758
AluBI	AGCT	5 cut(s)	30, 52, 61, 138, 547
AluI	AGCT	5 cut(s)	30, 52, 61, 138, 547
Alw21I	GWGCWC	1 cut(s)	941
Alw26I	GTCTC	3 cut(s)	350, 713, 828
Alw44I	GTGCAC	1 cut(s)	937
AlwI	GGATC	2 cut(s)	556, 792
Aor13HI	TCCGGA	1 cut(s)	806
ApaLI	GTGCAC	1 cut(s)	937
ApoI	RAATTY	4 cut(s)	277, 640, 856, 885
Asp700I	GAANNNNTTC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	593, 899
AsuHPI	GGTGA	2 cut(s)	398, 893
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	593, 899
AvrII	CCTAGG	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	941
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	941
BciT130I	CCWGG	3 cut(s)	384, 695, 773
BciVI	GTATCC	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	350, 713, 828
BfaI	CTAG	5 cut(s)	62, 176, 410, 464, 566
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	368
BlnI	CCTAGG	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	767
Bme1390I	CCNGG	3 cut(s)	384, 695, 773
Bme18I	GGWCC	2 cut(s)	593, 899
BmgT120I	GGNCC	2 cut(s)	593, 899
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	384, 695, 773
BmrI	ACTGGG	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	767
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	2 cut(s)	146, 830
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	382, 463, 714, 877
BsaWI	WCCGGW	1 cut(s)	806
Bsc4I	CCNNNNNNNGG	2 cut(s)	700, 896
Bse1I	ACTGG	2 cut(s)	405, 747
BseAI	TCCGGA	1 cut(s)	806
BseBI	CCWGG	3 cut(s)	384, 695, 773
BseDI	CCNNGG	4 cut(s)	382, 463, 714, 877
BseGI	GGATG	3 cut(s)	186, 378, 575
BseLI	CCNNNNNNNGG	2 cut(s)	700, 896
BseMII	CTCAG	2 cut(s)	25, 615
BseNI	ACTGG	2 cut(s)	405, 747
BseSI	GKGCMC	1 cut(s)	941
BseYI	CCCAGC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	237, 912
BslI	CCNNNNNNNGG	2 cut(s)	700, 896
BsmAI	GTCTC	3 cut(s)	350, 713, 828
BsmFI	GGGAC	2 cut(s)	237, 912
Bso31I	GGTCTC	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	941
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	2 cut(s)	561, 784
Bsp1720I	GCTNAGC	1 cut(s)	767
BspCNI	CTCAG	2 cut(s)	24, 614
BspEI	TCCGGA	1 cut(s)	806
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	556, 792
BspT104I	TTCGAA	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	405, 747
BssECI	CCNNGG	4 cut(s)	382, 463, 714, 877
BssMI	GATC	2 cut(s)	561, 784
BssT1I	CCWWGG	3 cut(s)	463, 714, 877
Bst2UI	CCWGG	3 cut(s)	384, 695, 773
BstBI	TTCGAA	1 cut(s)	211
BstDEI	CTNAG	5 cut(s)	11, 48, 134, 601, 767
BstF5I	GGATG	3 cut(s)	186, 378, 575
BstKTI	GATC	2 cut(s)	564, 787
BstMAI	GTCTC	3 cut(s)	350, 713, 828
BstMBI	GATC	2 cut(s)	561, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	3 cut(s)	384, 695, 773
BstSCI	CCNGG	3 cut(s)	382, 693, 771
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	941
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	186, 378, 575
BtsIMutI	CAGTG	2 cut(s)	19, 433
Cfr13I	GGNCC	2 cut(s)	593, 899
Csp6I	GTAC	2 cut(s)	130, 452
CviJI	RGCY	8 cut(s)	30, 45, 52, 61, 138, 312, 547, 771
CviKI_1	RGCY	8 cut(s)	30, 45, 52, 61, 138, 312, 547, 771
CviQI	GTAC	2 cut(s)	130, 452
DdeI	CTNAG	5 cut(s)	11, 48, 134, 601, 767
DpnI	GATC	2 cut(s)	563, 786
DpnII	GATC	2 cut(s)	561, 784
DraIII	CACNNNGTG	1 cut(s)	945
Eco130I	CCWWGG	3 cut(s)	463, 714, 877
Eco31I	GGTCTC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	593, 899
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	382, 693, 771
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	3 cut(s)	463, 714, 877
ErhI	CCWWGG	3 cut(s)	463, 714, 877
FaqI	GGGAC	2 cut(s)	237, 912
FblI	GTMKAC	1 cut(s)	284
FokI	GGATG	3 cut(s)	173, 365, 562
FspBI	CTAG	5 cut(s)	62, 176, 410, 464, 566
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	677
HapII	CCGG	1 cut(s)	807
HincII	GTYRAC	2 cut(s)	398, 516
HindII	GTYRAC	2 cut(s)	398, 516
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	3 cut(s)	225, 503, 690
HpaI	GTTAAC	1 cut(s)	516
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	2 cut(s)	398, 893
Hpy166II	GTNNAC	9 cut(s)	17, 184, 285, 389, 398, 516, 689, 899, 939
Hpy188I	TCNGA	3 cut(s)	238, 604, 855
Hpy188III	TCNNGA	4 cut(s)	55, 807, 827, 929
Hpy8I	GTNNAC	9 cut(s)	17, 184, 285, 389, 398, 516, 689, 899, 939
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	465
HpyCH4IV	ACGT	3 cut(s)	287, 484, 736
HpyCH4V	TGCA	4 cut(s)	318, 370, 479, 939
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	5 cut(s)	11, 48, 134, 601, 767
HpySE526I	ACGT	3 cut(s)	287, 484, 736
Kpn2I	TCCGGA	1 cut(s)	806
KspAI	GTTAAC	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	561, 784
MaeI	CTAG	5 cut(s)	62, 176, 410, 464, 566
MaeII	ACGT	3 cut(s)	287, 484, 736
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	2 cut(s)	563, 786
MboI	GATC	2 cut(s)	561, 784
MboII	GAAGA	5 cut(s)	63, 200, 251, 293, 617
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	1 cut(s)	941
MlyI	GAGTC	3 cut(s)	219, 512, 684
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	3 cut(s)	318, 606, 923
MroI	TCCGGA	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	4 cut(s)	116, 155, 248, 515
MslI	CAYNNNNRTG	1 cut(s)	660
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	3 cut(s)	384, 695, 773
MvaI	CCWGG	3 cut(s)	384, 695, 773
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	561, 784
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	700
PfoI	TCCNGGA	1 cut(s)	693
PleI	GAGTC	3 cut(s)	219, 511, 684
PpsI	GAGTC	3 cut(s)	219, 511, 684
Psp6I	CCWGG	3 cut(s)	382, 693, 771
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	382, 693, 771
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	2 cut(s)	593, 899
PsuI	RGATCY	1 cut(s)	784
RsaI	GTAC	2 cut(s)	131, 453
RsaNI	GTAC	2 cut(s)	130, 452
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	116, 155, 248, 515
Sau3AI	GATC	2 cut(s)	561, 784
Sau96I	GGNCC	2 cut(s)	593, 899
SchI	GAGTC	3 cut(s)	219, 512, 684
ScrFI	CCNGG	3 cut(s)	384, 695, 773
SduI	GDGCHC	1 cut(s)	941
SfcI	CTRYAG	1 cut(s)	891
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	2 cut(s)	593, 899
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	2 cut(s)	125, 845
SmoI	CTYRAG	2 cut(s)	125, 845
SspMI	CTAG	5 cut(s)	62, 176, 410, 464, 566
StyD4I	CCNGG	3 cut(s)	382, 693, 771
StyI	CCWWGG	3 cut(s)	463, 714, 877
TaiI	ACGT	3 cut(s)	290, 487, 739
TaqI	TCGA	1 cut(s)	211
Tru1I	TTAA	4 cut(s)	116, 155, 248, 515
Tru9I	TTAA	4 cut(s)	116, 155, 248, 515
TscAI	CASTG	2 cut(s)	19, 433
TseFI	GTSAC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	4 cut(s)	17, 540, 741, 830
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	2 cut(s)	19, 433
Van91I	CCANNNNNTGG	1 cut(s)	700
VneI	GTGCAC	1 cut(s)	937
VpaK11BI	GGWCC	2 cut(s)	593, 899
XapI	RAATTY	4 cut(s)	277, 640, 856, 885
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmaJI	CCTAGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	5 cut(s)	62, 176, 410, 464, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.