Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

36217782 .. 36218447

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1281200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTGTAAACTCATTTACCGGGTTTCTTCCTATCACACTCTGTTCCTTGAAAAACCTCGAGTACCTTAGCTTGTACACGAATAATCTGATGATTGATGCTTATACTCCACAAGCAGCAAGCATTCTATCTTGCTTGCTTAATCTTAGAAATTTGACTGAATTATTGTTGGCAGATAATCCACTAAACACCACGATTCCAGCTTCTCGTGGGAATATCTCTACGACACTCCTAACTGTTGATTTAAGCATTTCCAACATCAGGGGCAACATTCCCGTTGATATTGCCAATTTGAGCAGCTTGATAACATTAGACATAGGAAACAATCAGTTGAGTGGAGCAATTCCAACTTTAATACAAAGGCTACAGAATCTCCAAGCTTTGTATTTTAATGATAATGTTCTGCGAGGACAGATCCCGTATGGACTCTGTCAACTAAACAACCTAGCCGAGTTAGATTTGGGTGGTAATCGGCTCTCTGGTTCTATTCCCTCCTGCTTGGGTACTTTGGCAGTAGCTCTAAGAAGTCTTTCGTTAGGGTCCAATTTGCTAACTTCTAAAATACCATCTTCCTTGTGGGAACTCAAGTATATATTGCACCTAAACTTGTCATCCAATTCTCTAATTTTTGGCATAATCCATTTGAAAAATTTAGTTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04016 map04064 map04620 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

222

Amino Acids

23.86

Weight (kDa)

6.7

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	84 - 203	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	100 - 159	1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	2 cut(s)	151, 649
AfaI	GTAC	3 cut(s)	65, 77, 505
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	52, 646
AluBI	AGCT	5 cut(s)	72, 203, 300, 380, 518
AluI	AGCT	5 cut(s)	72, 203, 300, 380, 518
AlwI	GGATC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	116, 297
ApoI	RAATTY	2 cut(s)	151, 649
Asp700I	GAANNNNTTC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	540
BauI	CACGAG	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	128, 309
BccI	CCATC	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	117, 298
BlsI	GCNGC	2 cut(s)	118, 299
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	611
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	128, 309
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	123
BsoBI	CYCGRG	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	75
BssMI	GATC	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	121, 137
BstDEI	CTNAG	3 cut(s)	68, 146, 521
BstF5I	GGATG	1 cut(s)	611
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	128, 309
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	611
Cac8I	GCNNGC	2 cut(s)	121, 137
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	64, 76, 504
CviJI	RGCY	8 cut(s)	72, 203, 300, 364, 380, 449, 475, 518
CviKI_1	RGCY	8 cut(s)	72, 203, 300, 364, 380, 449, 475, 518
CviQI	GTAC	3 cut(s)	64, 76, 504
DdeI	CTNAG	3 cut(s)	68, 146, 521
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	59
FaiI	YATR	7 cut(s)	105, 317, 423, 591, 593, 635, 664
Fnu4HI	GCNGC	2 cut(s)	117, 298
FokI	GGATG	1 cut(s)	598
Fsp4HI	GCNGC	2 cut(s)	117, 298
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	2 cut(s)	117, 298
HapII	CCGG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	3 cut(s)	196, 370, 426
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	10, 78, 434
Hpy188I	TCNGA	1 cut(s)	90
Hpy8I	GTNNAC	3 cut(s)	10, 78, 434
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	598
HpyF3I	CTNAG	3 cut(s)	68, 146, 521
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	34, 213, 247, 465, 508
Lsp1109I	GCAGC	2 cut(s)	128, 309
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	446
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	2 cut(s)	20, 561
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	8 cut(s)	151, 161, 289, 342, 544, 616, 624, 649
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	279, 371
MnlI	CCTC	3 cut(s)	68, 401, 502
MroXI	GAANNNNTTC	1 cut(s)	529
MseI	TTAA	4 cut(s)	141, 245, 353, 390
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	541
NmeAIII	GCCGAG	1 cut(s)	475
PaeR7I	CTCGAG	1 cut(s)	59
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	196, 370
PflFI	GACNNNGTC	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	118, 299
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	540
PspXI	VCTCGAGB	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	429
RsaI	GTAC	3 cut(s)	65, 77, 505
RsaNI	GTAC	3 cut(s)	64, 76, 504
SaqAI	TTAA	4 cut(s)	141, 245, 353, 390
SatI	GCNGC	2 cut(s)	117, 298
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	9 cut(s)	60, 69, 74, 205, 302, 382, 447, 520, 603
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	540
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	59, 584
SmoI	CTYRAG	2 cut(s)	59, 584
Sse9I	AATT	8 cut(s)	151, 161, 289, 342, 544, 616, 624, 649
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	60
TasI	AATT	8 cut(s)	151, 161, 289, 342, 544, 616, 624, 649
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	196, 370
Tru1I	TTAA	4 cut(s)	141, 245, 353, 390
Tru9I	TTAA	4 cut(s)	141, 245, 353, 390
TseI	GCWGC	2 cut(s)	116, 297
Tth111I	GACNNNGTC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	2 cut(s)	151, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	529
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.