Rh5BG083200

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
7210411 .. 7211739
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG083200.1

Sequence Viewer

Length: 1329 bp
ATGACAATTAAGGTGTTGATATTAATTTTGGCAGGGACTATACCACATGAGATTGGTCATCTTCCAAGTTTAGAGAGATTGAGCCTCGGAATTAATAATCTCAGTGGTCTCATCCCATCCTCGATCTTCAATATTTCCACAATAACATTGATAGATCTTCACGACAATCAGCTCTCAGGCACCCTTCCAGCAAACATAGGCCTTGGGCTTCCAAACCTCCAATTTTTCTTCATAGGAGGAAATAAGCTCAGTGGAGTACTCCCTAAATCCATCTCCAATGCTTCTCAGCTCATAAGGCTAGAGCTTGGCCAAAACTTATTTTCCGGCTTTATTCCTAGTGAGCTCTGTGCCTTAGCAAACCTTTATCGGCTTGCCTTACACCAGAATAATTTGACCATTGATACTTCTATTCCAGAAGTAAATTTTTTCTCTTGTTTGGCAAATCTTAAAGATCTGAGCACATTAGCCTTGTCACACAATCCTTTAAATGCCAAGCTTTCGGTTTCCTTTAGTAATCTCTCAGCATCACTTGAATTCATTTATTTAGGTGACTGCAACATGAGAGGTAACATCCCCAATGATATAGGCAACTTGAGCAACTTAACACTCTTAGACCTTGCGGAAAATAAACTGAGTGGACCAGTTCCAACTTCAATGGGAAGATTACAGAATGTCCAAATTTTGGATGTGCATGGTAATAAATTGCAAGGACACATTCCGGATGAACTTTGTCAACTAATCCATCTAAATGAGTTAAGTCTGTATGGGAATCAACTTACTGGTGCCATACCTGCCTGCTTGGGTGATCTAAATGCAGCTCTAAGAGGTCTATTCTTACAGTCCAATTTGTTAACATCCGCAATACCATCTACCTTGTGGGGGCTTTCAGATATCTTGCACTTAAACCTTTCATCCAACTCTCTAGTTGGGCCTCTCTCAGAAGGTTTTGGCAATTTGAAAGTTGTCATCGATGTAGATTTATCAAACAACCAACTATCTGGCAGCATACCAAGCAGTATTCAGAGTCTACAAAATTTGGTCAATCTGTCCTTGGCAAGTAATAATTTAGAAGGCCCTATTCCTAGTTCCTTTGGAAACTTGCTAAGCTTAGTACGCTTGGATTTATCCCAGAACAATCTCTCTGGAATGATTCCAAAGTCTCTAGAAGCACTCTCATATCTCAAGTATCTGAACTTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACAGGCGGACCTTTCACAAACTTGTCTGCTCAATCGTTTGTTTCAAACCGTGGACTCTGGTGTATCCCGATTTCATGTTCAACCATGCAAAAGGAAAAGTGA

Protein Analysis

442

Amino Acids

47.36

Weight (kDa)

5.69

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 169 - 258 1.9e-07 Leucine-rich repeat region
LRR_14 PF23598 290 - 404 1.3e-07 Leucine-rich repeat region
LRR_8 PF13855 345 - 404 6.5e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 799
AccB1I GGYRCC 2 cut(s) 179, 782
AccB7I CCANNNNNTGG 1 cut(s) 682
AccI GTMKAC 1 cut(s) 1027
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 3 cut(s) 620, 858, 1233
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 5 cut(s) 421, 533, 678, 1033, 1221
AfaI GTAC 2 cut(s) 258, 1113
AfiI CCNNNNNNNGG 3 cut(s) 682, 879, 1232
AgsI TTSAA 7 cut(s) 130, 533, 654, 958, 1204, 1272, 1308
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
AluBI AGCT 8 cut(s) 172, 247, 289, 304, 343, 496, 818, 1107
AluI AGCT 8 cut(s) 172, 247, 289, 304, 343, 496, 818, 1107
Alw21I GWGCWC 2 cut(s) 345, 461
Alw26I GTCTC 2 cut(s) 113, 1164
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 4 cut(s) 199, 307, 929, 1072
ApeKI GCWGC 2 cut(s) 815, 1002
ApoI RAATTY 5 cut(s) 421, 533, 678, 1033, 1221
AseI ATTAAT 2 cut(s) 23, 93
AspS9I GGNCC 4 cut(s) 638, 929, 1073, 1235
AsuHPI GGTGA 2 cut(s) 560, 815
AvaII GGWCC 2 cut(s) 638, 1235
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 2 cut(s) 179, 782
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 345, 461
BbvI GCAGC 2 cut(s) 827, 1014
BccI CCATC 4 cut(s) 124, 278, 750, 874
BciVI GTATCC 1 cut(s) 1301
BcoDI GTCTC 2 cut(s) 113, 1164
BfaI CTAG 5 cut(s) 299, 336, 923, 1083, 1163
BfuAI ACCTGC 1 cut(s) 799
BfuI GTATCC 1 cut(s) 1301
BglII AGATCT 2 cut(s) 154, 451
BisI GCNGC 2 cut(s) 816, 1003
BlpI GCTNAGC 1 cut(s) 1103
BlsI GCNGC 2 cut(s) 817, 1004
BmcAI AGTACT 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 638, 1235
BmgT120I GGNCC 4 cut(s) 638, 929, 1073, 1235
BmiI GGNNCC 2 cut(s) 181, 784
BmsI GCATC 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 352
Bpu1102I GCTNAGC 1 cut(s) 1103
BpuEI CTTGAG 2 cut(s) 613, 1166
Bsa29I ATCGAT 1 cut(s) 969
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 5 cut(s) 85, 202, 1050, 1213, 1276
BsaWI WCCGGW 1 cut(s) 718
Bsc4I CCNNNNNNNGG 3 cut(s) 682, 879, 1232
Bse1I ACTGG 2 cut(s) 641, 784
BseAI TCCGGA 1 cut(s) 718
BseCI ATCGAT 1 cut(s) 969
BseDI CCNNGG 5 cut(s) 85, 202, 1050, 1213, 1276
BseGI GGATG 7 cut(s) 111, 116, 570, 691, 727, 854, 911
BseLI CCNNNNNNNGG 3 cut(s) 682, 879, 1232
BseMII CTCAG 8 cut(s) 115, 189, 262, 299, 446, 534, 623, 951
BseNI ACTGG 2 cut(s) 641, 784
BseXI GCAGC 2 cut(s) 827, 1014
BshFI GGCC 4 cut(s) 201, 309, 931, 1074
BshNI GGYRCC 2 cut(s) 179, 782
BshVI ATCGAT 1 cut(s) 969
BsiHKAI GWGCWC 2 cut(s) 345, 461
BsiSI CCGG 2 cut(s) 324, 719
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 3 cut(s) 682, 879, 1232
BsmAI GTCTC 2 cut(s) 113, 1164
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 4 cut(s) 201, 309, 931, 1074
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 345, 461
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 123, 154, 451, 805
Bsp1720I GCTNAGC 1 cut(s) 1103
BspACI CCGC 3 cut(s) 620, 858, 1233
BspANI GGCC 4 cut(s) 201, 309, 931, 1074
BspCNI CTCAG 8 cut(s) 114, 188, 261, 298, 447, 533, 624, 950
BspDI ATCGAT 1 cut(s) 969
BspEI TCCGGA 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 181, 784
BspMI ACCTGC 1 cut(s) 799
BspT107I GGYRCC 2 cut(s) 179, 782
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 641, 784
BssECI CCNNGG 5 cut(s) 85, 202, 1050, 1213, 1276
BssMI GATC 4 cut(s) 123, 154, 451, 805
BssT1I CCWWGG 3 cut(s) 202, 1050, 1213
Bst4CI ACNGT 2 cut(s) 840, 1277
BstC8I GCNNGC 2 cut(s) 372, 796
BstDSI CCRYGG 1 cut(s) 1276
BstF5I GGATG 7 cut(s) 111, 116, 570, 691, 727, 854, 911
BstKTI GATC 4 cut(s) 126, 157, 454, 808
BstMAI GTCTC 2 cut(s) 113, 1164
BstMBI GATC 4 cut(s) 123, 154, 451, 805
BstMWI GCNNNNNNNGC 5 cut(s) 295, 594, 791, 1011, 1113
BstV1I GCAGC 2 cut(s) 827, 1014
BstX2I RGATCY 2 cut(s) 154, 451
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 2 cut(s) 154, 451
Bsu15I ATCGAT 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1301
BsuRI GGCC 4 cut(s) 201, 309, 931, 1074
BsuTUI ATCGAT 1 cut(s) 969
BtgI CCRYGG 1 cut(s) 1276
BtsCI GGATG 7 cut(s) 111, 116, 570, 691, 727, 854, 911
BtsIMutI CAGTG 2 cut(s) 109, 256
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 372, 796
Cfr13I GGNCC 4 cut(s) 638, 929, 1073, 1235
ClaI ATCGAT 1 cut(s) 969
Csp6I GTAC 2 cut(s) 257, 1112
CviAII CATG 5 cut(s) 47, 559, 692, 1302, 1312
CviQI GTAC 2 cut(s) 257, 1112
DpnI GATC 4 cut(s) 125, 156, 453, 807
DpnII GATC 4 cut(s) 123, 154, 451, 805
DraI TTTAAA 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 307
EciI GGCGGA 1 cut(s) 1248
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 202, 1050, 1213
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 638, 1235
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRI GAATTC 1 cut(s) 533
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 3 cut(s) 202, 1050, 1213
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 3 cut(s) 202, 1050, 1213
FaeI CATG 5 cut(s) 50, 562, 695, 1305, 1315
FaqI GGGAC 1 cut(s) 49
FatI CATG 5 cut(s) 46, 558, 691, 1301, 1311
FblI GTMKAC 1 cut(s) 1027
Fnu4HI GCNGC 2 cut(s) 816, 1003
FokI GGATG 7 cut(s) 98, 103, 557, 698, 734, 841, 898
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 816, 1003
FspBI CTAG 5 cut(s) 299, 336, 923, 1083, 1163
GluI GCNGC 2 cut(s) 816, 1003
HaeIII GGCC 4 cut(s) 201, 309, 931, 1074
HapII CCGG 2 cut(s) 324, 719
Hin1II CATG 5 cut(s) 50, 562, 695, 1305, 1315
HincII GTYRAC 2 cut(s) 734, 852
HindII GTYRAC 2 cut(s) 734, 852
HindIII AAGCTT 2 cut(s) 494, 1105
HinfI GANTC 4 cut(s) 769, 1024, 1150, 1281
HpaI GTTAAC 1 cut(s) 852
HpaII CCGG 2 cut(s) 324, 719
HphI GGTGA 2 cut(s) 560, 815
Hpy166II GTNNAC 5 cut(s) 638, 734, 852, 1028, 1280
Hpy188I TCNGA 6 cut(s) 89, 456, 889, 940, 1023, 1191
Hpy188III TCNNGA 6 cut(s) 161, 413, 719, 1143, 1163, 1294
Hpy8I GTNNAC 5 cut(s) 638, 734, 852, 1028, 1280
HpyAV CCTTC 3 cut(s) 194, 935, 1064
HpyCH4III ACNGT 2 cut(s) 840, 1277
HpyCH4V TGCA 6 cut(s) 555, 691, 706, 815, 898, 1315
HpyF10VI GCNNNNNNNGC 5 cut(s) 295, 594, 791, 1011, 1113
Hsp92II CATG 5 cut(s) 50, 562, 695, 1305, 1315
Kpn2I TCCGGA 1 cut(s) 718
KspAI GTTAAC 1 cut(s) 852
Kzo9I GATC 4 cut(s) 123, 154, 451, 805
Lsp1109I GCAGC 2 cut(s) 827, 1014
LweI GCATC 1 cut(s) 533
MaeI CTAG 5 cut(s) 299, 336, 923, 1083, 1163
MaeIII GTNAC 3 cut(s) 471, 548, 566
MalI GATC 4 cut(s) 125, 156, 453, 807
MboI GATC 4 cut(s) 123, 154, 451, 805
MboII GAAGA 5 cut(s) 53, 118, 149, 220, 672
MflI RGATCY 2 cut(s) 154, 451
MhlI GDGCHC 2 cut(s) 345, 461
MlsI TGGCCA 1 cut(s) 309
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 2 cut(s) 1033, 1275
MmeI TCCRAC 3 cut(s) 671, 939, 1250
MnlI CCTC 7 cut(s) 95, 130, 227, 230, 557, 818, 942
Mox20I TGGCCA 1 cut(s) 309
MroI TCCGGA 1 cut(s) 718
MscI TGGCCA 1 cut(s) 309
MseI TTAA 9 cut(s) 9, 23, 93, 447, 485, 602, 755, 851, 902
MslI CAYNNNNRTG 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 2 cut(s) 324, 719
MwoI GCNNNNNNNGC 5 cut(s) 295, 594, 791, 1011, 1113
NdeII GATC 4 cut(s) 123, 154, 451, 805
NlaIII CATG 5 cut(s) 50, 562, 695, 1305, 1315
NlaIV GGNNCC 2 cut(s) 181, 784
NmuCI GTSAC 2 cut(s) 471, 548
PceI AGGCCT 1 cut(s) 201
PfeI GAWTC 2 cut(s) 769, 1150
PflMI CCANNNNNTGG 1 cut(s) 682
PkrI GCNGC 2 cut(s) 817, 1004
PleI GAGTC 2 cut(s) 1032, 1275
PpsI GAGTC 2 cut(s) 1032, 1275
PshBI ATTAAT 2 cut(s) 23, 93
Psp124BI GAGCTC 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 181, 784
PspPI GGNCC 4 cut(s) 638, 929, 1073, 1235
PsuI RGATCY 2 cut(s) 154, 451
RsaI GTAC 2 cut(s) 258, 1113
RsaNI GTAC 2 cut(s) 257, 1112
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 9 cut(s) 9, 23, 93, 447, 485, 602, 755, 851, 902
SatI GCNGC 2 cut(s) 816, 1003
Sau3AI GATC 4 cut(s) 123, 154, 451, 805
Sau96I GGNCC 4 cut(s) 638, 929, 1073, 1235
ScaI AGTACT 1 cut(s) 258
SchI GAGTC 2 cut(s) 1033, 1275
SduI GDGCHC 2 cut(s) 345, 461
SfaNI GCATC 1 cut(s) 533
SinI GGWCC 2 cut(s) 638, 1235
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 2 cut(s) 592, 1181
SmoI CTYRAG 2 cut(s) 592, 1181
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 3 cut(s) 620, 858, 1233
SspI AATATT 1 cut(s) 133
SspMI CTAG 5 cut(s) 299, 336, 923, 1083, 1163
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 201
StyI CCWWGG 3 cut(s) 202, 1050, 1213
TaaI ACNGT 2 cut(s) 840, 1277
TaqI TCGA 2 cut(s) 122, 969
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 2 cut(s) 769, 1150
Tru1I TTAA 9 cut(s) 9, 23, 93, 447, 485, 602, 755, 851, 902
Tru9I TTAA 9 cut(s) 9, 23, 93, 447, 485, 602, 755, 851, 902
TscAI CASTG 2 cut(s) 109, 256
TseFI GTSAC 2 cut(s) 471, 548
TseI GCWGC 2 cut(s) 815, 1002
Tsp45I GTSAC 2 cut(s) 471, 548
TspDTI ATGAA 5 cut(s) 220, 526, 738, 900, 1290
TspRI CASTG 2 cut(s) 109, 256
Van91I CCANNNNNTGG 1 cut(s) 682
VpaK11BI GGWCC 2 cut(s) 638, 1235
VspI ATTAAT 2 cut(s) 23, 93
XapI RAATTY 5 cut(s) 421, 533, 678, 1033, 1221
XbaI TCTAGA 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmiI GTMKAC 1 cut(s) 1027
XspI CTAG 5 cut(s) 299, 336, 923, 1083, 1163
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.