Rw6G015370

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
29017835 .. 29021578
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015370.1

Sequence Viewer

Length: 1578 bp
ATGGCAGCACAAACCAACCTTATTAACATCACCACAGATCGATATGCTCTTCTTGCTCTAAAAGCCTATATCACCAGTGACCCTCAAAACATGATCTTTACCAATTGGTCAGCCACCACCCCTGTTTGCAACTGGGTTGGCGTCATTTGTAGTCCACGCTATCATCGAGTCACAAAGTTGAACCTTTCTTACTTTGGTCTTGTGGGCACCATCCCTCCTAAGCTAGGCAACTTATCATTGCTTGTTGATCTGGACATCCAAAATAACAGTTTCCAGGGTATCTTGCCTCATGAATTGGCTCGCCTACGCCGGTTGAAGTTTATTAACTTGGGATACAACAAGTTTATGGGAGTGATACCGTCATGGTTTGGGTTCTTGTCCAAACTTCAAGGATTCAAGTTGTTTGGTAATCAATTTGCTGGTTCCATACCAGCCACCATCTTCAACTTATCTGCTTTGCAAGTAATTGATCTGAGTTATAACCAACTCTCAGAGATTCCAAATGAGTTTGGCACCTTGAATCAGCTAGAAAATTTGCTTGTGCAAGAAAATGCCTTAAAAGGGCCTATTCCTATGGGTGTCTTCAATATGTCATCTTTGACTACTGTAACTTTCTACGGAAACAACTTGAATGGTAGAATTCCCGACAATATATGCACTATACCATATGAGTTTGGGTATCTTCCAAATTTAGAGAGGTTGTGGCTTGATGAAAATAATCTAAATGGCTATGTCCCAGCCTCAATCTTCAATATCTCCACAATAACATCATTAGATTTCGGCTGCAATCAGCTTTCAGGTAGCCTCCCAGCAAACATAGACCTTGCACTTCCAAACCTTGAAGAGTTTCTAGTAGGAACGAATCACCTCAGTGGAGTAATCCCCAAATCCTTCTTCAACGCTTCTAAGCTTCGATTTCTAGAACTGTGTATTAACTCTTTTTCTGGATTTATTCCAAGCACTTTGTGCCTCTTGCCAAACCTTGAATTGGTCAATTTCTTCGACAATAATTTGACCATTGATACCTCTACTCCAGAAGTTAATATTTTGTCTTGTCTGGAAAATCTTAGAAATTTGAGACGCTTCGGCTTCAATAACAATCCATTAAATGCCGAGCTTTCGAATTCCTTCAGTAATTTCTCTGCATCGCTTGAGTATATTTATTTAGGAAATTGCATCTTGAGAGGTAACATCCCCAGTGATATAGGCAATTTGAGTGGCTTGTTATTCTTAGCCCTCGATGGGAATCAATTGAGCGGGCCAATTCCAGGCTCAATGGGAAGACTACATAATCTTCAAGAAGGCCCTATAGCTAGTTCCTTTGGAACCTGTGTAAGCTTAGAACGATTGGATTTATCTCAGAATAGTTTCACAGGAGTGATTCCAAAGTCTCTAGAAACACTATCATATCTCAAGTATCTAAATTTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACCGGCGGTCCTTTCAAAAACTTCTCTGCTGAATCATTTATTTCCAATCGTGGACTCTGTGGTGCATCCCGATTTGAAGTTCCAACATGCAAAAGAAAAACTAGTATGTCTCTATCTTGA

Protein Analysis

525

Amino Acids

57.92

Weight (kDa)

6.15

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 12 - 51 6e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 81 - 139 3.4e-06 Leucine rich repeat
LRR_8 PF13855 142 - 186 6.5e-07 Leucine rich repeat
LRR_14 PF23598 142 - 203 2.3e-07 Leucine-rich repeat region
LRR_8 PF13855 439 - 481 4.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccB1I GGYRCC 2 cut(s) 206, 512
AccBSI CCGCTC 1 cut(s) 1257
AciI CCGC 2 cut(s) 1257, 1464
AcsI RAATTY 7 cut(s) 532, 639, 688, 1072, 1123, 1423, 1452
AcuI CTGAAG 1 cut(s) 1114
AcyI GRCGYC 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 966
AfiI CCNNNNNNNGG 6 cut(s) 224, 561, 988, 1242, 1268, 1463
AhlI ACTAGT 1 cut(s) 1559
AjnI CCWGG 2 cut(s) 273, 1267
AjuI GAANNNNNNNTTGG 4 cut(s) 878, 910, 1437, 1469
AleI CACNNNNGTG 2 cut(s) 870, 1376
AluBI AGCT 7 cut(s) 223, 526, 793, 910, 1117, 1313, 1338
AluI AGCT 7 cut(s) 223, 526, 793, 910, 1117, 1313, 1338
Alw26I GTCTC 3 cut(s) 1072, 1395, 1572
AoxI GGCC 3 cut(s) 563, 1259, 1303
ApeKI GCWGC 2 cut(s) 5, 783
ApoI RAATTY 7 cut(s) 532, 639, 688, 1072, 1123, 1423, 1452
Asp700I GAANNNNTTC 3 cut(s) 846, 1127, 1367
AspS9I GGNCC 4 cut(s) 563, 1259, 1304, 1466
AsuHPI GGTGA 3 cut(s) 22, 64, 857
AsuII TTCGAA 1 cut(s) 1121
AvaII GGWCC 1 cut(s) 1466
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 206, 512
BbsI GAAGAC 2 cut(s) 574, 1288
BbvI GCAGC 2 cut(s) 17, 770
BccI CCATC 3 cut(s) 218, 446, 1235
BciT130I CCWGG 2 cut(s) 275, 1269
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 1072, 1395, 1572
BcuI ACTAGT 1 cut(s) 1559
BfaI CTAG 7 cut(s) 224, 527, 851, 920, 1314, 1394, 1560
BfmI CTRYAG 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 2 cut(s) 6, 784
BlsI GCNGC 2 cut(s) 7, 785
Bme1390I CCNGG 2 cut(s) 275, 1269
Bme18I GGWCC 1 cut(s) 1466
BmgT120I GGNCC 4 cut(s) 563, 1259, 1304, 1466
BmiI GGNNCC 4 cut(s) 208, 424, 514, 1327
BmrFI CCNGG 2 cut(s) 275, 1269
BmrI ACTGGG 2 cut(s) 142, 1191
BmsI GCATC 3 cut(s) 1154, 1185, 1532
BmuI ACTGGG 2 cut(s) 142, 1191
BpiI GAAGAC 2 cut(s) 574, 1288
BpmI CTGGAG 1 cut(s) 1017
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 1121
BpuEI CTTGAG 3 cut(s) 1172, 1201, 1397
Bsa29I ATCGAT 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 1245
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 274, 1444
BsaXI ACNNNNNCTCC 4 cut(s) 199, 229, 1015, 1045
Bsc4I CCNNNNNNNGG 6 cut(s) 224, 561, 988, 1242, 1268, 1463
Bse118I RCCGGY 2 cut(s) 309, 1460
Bse1I ACTGG 3 cut(s) 75, 137, 1197
Bse3DI GCAATG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 1245
BseBI CCWGG 2 cut(s) 275, 1269
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 274, 1444
BseGI GGATG 4 cut(s) 210, 255, 1191, 1523
BseJI GATNNNNATC 1 cut(s) 1245
BseLI CCNNNNNNNGG 6 cut(s) 224, 561, 988, 1242, 1268, 1463
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 4 cut(s) 464, 504, 883, 1373
BseNI ACTGG 3 cut(s) 75, 137, 1197
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 17, 770
BseYI CCCAGC 2 cut(s) 736, 808
BshFI GGCC 3 cut(s) 565, 1261, 1305
BshNI GGYRCC 2 cut(s) 206, 512
BshVI ATCGAT 1 cut(s) 40
BsiSI CCGG 2 cut(s) 310, 1461
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 6 cut(s) 224, 561, 988, 1242, 1268, 1463
BsmAI GTCTC 3 cut(s) 1072, 1395, 1572
BsmBI CGTCTC 1 cut(s) 1072
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 3 cut(s) 565, 1261, 1305
Bsp119I TTCGAA 1 cut(s) 1121
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 37, 93, 247, 469
BspACI CCGC 2 cut(s) 1257, 1464
BspANI GGCC 3 cut(s) 565, 1261, 1305
BspCNI CTCAG 4 cut(s) 465, 503, 882, 1372
BspDI ATCGAT 1 cut(s) 40
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 4 cut(s) 208, 424, 514, 1327
BspQI GCTCTTC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 1121
BspT107I GGYRCC 2 cut(s) 206, 512
BsrBI CCGCTC 1 cut(s) 1257
BsrDI GCAATG 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 309, 1460
BsrI ACTGG 3 cut(s) 75, 137, 1197
BssAI RCCGGY 2 cut(s) 309, 1460
BssECI CCNNGG 2 cut(s) 274, 1444
BssMI GATC 4 cut(s) 37, 93, 247, 469
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 1444
Bst2UI CCWGG 2 cut(s) 275, 1269
Bst4CI ACNGT 4 cut(s) 269, 360, 607, 927
Bst6I CTCTTC 2 cut(s) 54, 837
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 301, 1259
BstDEI CTNAG 9 cut(s) 219, 473, 490, 869, 906, 1067, 1231, 1339, 1359
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 210, 255, 1191, 1523
BstKTI GATC 4 cut(s) 40, 96, 250, 472
BstMAI GTCTC 3 cut(s) 1072, 1395, 1572
BstMBI GATC 4 cut(s) 37, 93, 247, 469
BstMWI GCNNNNNNNGC 3 cut(s) 53, 62, 966
BstNI CCWGG 2 cut(s) 275, 1269
BstNSI RCATGY 1 cut(s) 1548
BstSCI CCNGG 2 cut(s) 273, 1267
BstSFI CTRYAG 1 cut(s) 1308
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 17, 770
BstV2I GAAGAC 2 cut(s) 574, 1288
Bsu15I ATCGAT 1 cut(s) 40
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 3 cut(s) 565, 1261, 1305
BsuTUI ATCGAT 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 1131
BtsCI GGATG 4 cut(s) 210, 255, 1191, 1523
BtsIMutI CAGTG 3 cut(s) 82, 877, 1204
Cac8I GCNNGC 2 cut(s) 301, 1259
CciI TCATGA 1 cut(s) 289
Cfr10I RCCGGY 2 cut(s) 309, 1460
Cfr13I GGNCC 4 cut(s) 563, 1259, 1304, 1466
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 2 cut(s) 130, 1089
CspCI CAANNNNNGTGG 2 cut(s) 1198, 1233
CviAII CATG 4 cut(s) 91, 290, 363, 1545
DdeI CTNAG 9 cut(s) 219, 473, 490, 869, 906, 1067, 1231, 1339, 1359
DpnI GATC 4 cut(s) 39, 95, 249, 471
DpnII GATC 4 cut(s) 37, 93, 247, 469
DraIII CACNNNGTG 1 cut(s) 966
Eam1104I CTCTTC 2 cut(s) 54, 837
EarI CTCTTC 2 cut(s) 54, 837
Eco130I CCWWGG 1 cut(s) 1444
Eco47I GGWCC 1 cut(s) 1466
Eco57I CTGAAG 1 cut(s) 1114
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 563, 1304
EcoRI GAATTC 2 cut(s) 639, 1123
EcoRII CCWGG 2 cut(s) 273, 1267
EcoT14I CCWWGG 1 cut(s) 1444
ErhI CCWWGG 1 cut(s) 1444
Esp3I CGTCTC 1 cut(s) 1072
FaeI CATG 4 cut(s) 94, 293, 366, 1548
FaqI GGGAC 1 cut(s) 719
FatI CATG 4 cut(s) 90, 289, 362, 1544
FauI CCCGC 1 cut(s) 1250
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 6, 784
FokI GGATG 4 cut(s) 197, 242, 1178, 1510
Fsp4HI GCNGC 2 cut(s) 6, 784
FspBI CTAG 7 cut(s) 224, 527, 851, 920, 1314, 1394, 1560
GluI GCNGC 2 cut(s) 6, 784
GsaI CCCAGC 2 cut(s) 740, 812
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 3 cut(s) 565, 1261, 1305
HapII CCGG 2 cut(s) 310, 1461
HgaI GACGC 2 cut(s) 130, 1089
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 94, 293, 366, 1548
HindIII AAGCTT 2 cut(s) 908, 1336
HinfI GANTC 9 cut(s) 168, 393, 496, 520, 862, 1246, 1381, 1490, 1512
HpaII CCGG 2 cut(s) 310, 1461
HphI GGTGA 3 cut(s) 22, 64, 857
Hpy166II GTNNAC 2 cut(s) 155, 1511
Hpy188I TCNGA 3 cut(s) 474, 493, 1362
Hpy8I GTNNAC 2 cut(s) 155, 1511
HpyAV CCTTC 3 cut(s) 901, 1138, 1295
HpyCH4III ACNGT 4 cut(s) 269, 360, 607, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 62, 966
HpyF3I CTNAG 9 cut(s) 219, 473, 490, 869, 906, 1067, 1231, 1339, 1359
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 94, 293, 366, 1548
Kzo9I GATC 4 cut(s) 37, 93, 247, 469
LguI GCTCTTC 1 cut(s) 54
Lsp1109I GCAGC 2 cut(s) 17, 770
LweI GCATC 3 cut(s) 1154, 1185, 1532
MaeI CTAG 7 cut(s) 224, 527, 851, 920, 1314, 1394, 1560
MaeIII GTNAC 4 cut(s) 77, 169, 607, 1187
MalI GATC 4 cut(s) 39, 95, 249, 471
MbiI CCGCTC 1 cut(s) 1257
MboI GATC 4 cut(s) 37, 93, 247, 469
MfeI CAATTG 2 cut(s) 103, 1250
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 2 cut(s) 177, 1506
MmeI TCCRAC 2 cut(s) 1481, 1565
MroXI GAANNNNTTC 3 cut(s) 846, 1127, 1367
MseI TTAA 6 cut(s) 24, 324, 557, 933, 1041, 1106
MslI CAYNNNNRTG 2 cut(s) 870, 1376
MspI CCGG 2 cut(s) 310, 1461
MspR9I CCNGG 2 cut(s) 275, 1269
MunI CAATTG 2 cut(s) 103, 1250
MvaI CCWGG 2 cut(s) 275, 1269
MwoI GCNNNNNNNGC 3 cut(s) 53, 62, 966
NdeI CATATG 1 cut(s) 667
NdeII GATC 4 cut(s) 37, 93, 247, 469
NlaIII CATG 4 cut(s) 94, 293, 366, 1548
NlaIV GGNNCC 4 cut(s) 208, 424, 514, 1327
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 2 cut(s) 77, 169
NspI RCATGY 1 cut(s) 1548
NspV TTCGAA 1 cut(s) 1121
OliI CACNNNNGTG 2 cut(s) 870, 1376
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PdmI GAANNNNTTC 3 cut(s) 846, 1127, 1367
PfeI GAWTC 7 cut(s) 393, 496, 520, 862, 1246, 1381, 1490
PkrI GCNGC 2 cut(s) 7, 785
PleI GAGTC 2 cut(s) 176, 1506
PpsI GAGTC 2 cut(s) 176, 1506
PsiI TTATAA 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 273, 1267
PspFI CCCAGC 2 cut(s) 736, 808
PspGI CCWGG 2 cut(s) 273, 1267
PspN4I GGNNCC 4 cut(s) 208, 424, 514, 1327
PspPI GGNCC 4 cut(s) 563, 1259, 1304, 1466
PsrI GAACNNNNNNTAC 2 cut(s) 173, 205
RseI CAYNNNNRTG 2 cut(s) 870, 1376
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 6 cut(s) 24, 324, 557, 933, 1041, 1106
SatI GCNGC 2 cut(s) 6, 784
Sau3AI GATC 4 cut(s) 37, 93, 247, 469
Sau96I GGNCC 4 cut(s) 563, 1259, 1304, 1466
SchI GAGTC 2 cut(s) 177, 1506
ScrFI CCNGG 2 cut(s) 275, 1269
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 3 cut(s) 1154, 1185, 1532
SfcI CTRYAG 1 cut(s) 1308
SfuI TTCGAA 1 cut(s) 1121
SinI GGWCC 1 cut(s) 1466
SmiMI CAYNNNNRTG 2 cut(s) 870, 1376
SmlI CTYRAG 3 cut(s) 1151, 1180, 1412
SmoI CTYRAG 3 cut(s) 1151, 1180, 1412
SpeI ACTAGT 1 cut(s) 1559
SsiI CCGC 2 cut(s) 1257, 1464
SspI AATATT 1 cut(s) 1045
SspMI CTAG 7 cut(s) 224, 527, 851, 920, 1314, 1394, 1560
StyD4I CCNGG 2 cut(s) 273, 1267
StyI CCWWGG 1 cut(s) 1444
TaaI ACNGT 4 cut(s) 269, 360, 607, 927
TaqI TCGA 6 cut(s) 40, 166, 913, 1002, 1121, 1239
TfiI GAWTC 7 cut(s) 393, 496, 520, 862, 1246, 1381, 1490
Tru1I TTAA 6 cut(s) 24, 324, 557, 933, 1041, 1106
Tru9I TTAA 6 cut(s) 24, 324, 557, 933, 1041, 1106
TscAI CASTG 3 cut(s) 82, 877, 1204
TseFI GTSAC 2 cut(s) 77, 169
TseI GCWGC 2 cut(s) 5, 783
Tsp45I GTSAC 2 cut(s) 77, 169
TspDTI ATGAA 2 cut(s) 306, 726
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 3 cut(s) 82, 877, 1204
VpaK11BI GGWCC 1 cut(s) 1466
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 7 cut(s) 532, 639, 688, 1072, 1123, 1423, 1452
XbaI TCTAGA 2 cut(s) 919, 1393
XceI RCATGY 1 cut(s) 1548
XmnI GAANNNNTTC 3 cut(s) 846, 1127, 1367
XspI CTAG 7 cut(s) 224, 527, 851, 920, 1314, 1394, 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.