Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

7256687 .. 7257157

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCCAATGCTTCTCAGCTCACGACCCTATCATTGGAAGAAAACTTTCTTTCAGGCTTTATTCCTAGCACGCTGTGTGCCTTAACAAACCTTGAGCGGCTTTCCTTAGATGAGAATAATTTAACTCTTGATACTCCTACTACGGAAGTAAATGTTCTCTCTTGCTTGGCAAATCTAAAAAATTTGAAGCACTTGGACTTCAGTAAAAACCCATTAAATGCCAACCTCCCTATTTCTATTAGAAATTTCTCTTCATCACTTCAGAATGTTTATCTATACAGCTGCAACATGAGAGACAATATTCCTGACGATATAGGCAACTTGAGCGGCTTGATAGTCTTATCCATGTTTTTTTTTTTAAGAAAAGGAGATAATTTCATTCATTTATCCATGGCTAGAAGGCACGTACATCGAATACTGTCTTACACCAAAATCATACATGGTATAAGCTACCAGGCAAAGGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04016 map04064 map04620 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

156

Amino Acids

17.63

Weight (kDa)

7.77

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	97, 327
AciI	CCGC	2 cut(s)	97, 327
AcsI	RAATTY	2 cut(s)	181, 244
AcuI	CTGAAG	2 cut(s)	184, 245
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	34, 460
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	19, 282, 450
AluI	AGCT	3 cut(s)	19, 282, 450
Alw26I	GTCTC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	181, 244
Asp700I	GAANNNNTTC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	66, 396
BisI	GCNGC	3 cut(s)	98, 283, 328
BlsI	GCNGC	3 cut(s)	99, 284, 329
Bme1390I	CCNGG	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	455
BpuEI	CTTGAG	2 cut(s)	113, 343
BsaAI	YACGTR	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 460
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	390
BseLI	CCNNNNNNNGG	2 cut(s)	34, 460
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	34, 460
BsmAI	GTCTC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	97, 327
BspCNI	CTCAG	1 cut(s)	28
BsrBI	CCGCTC	2 cut(s)	97, 327
BssECI	CCNNGG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	15, 106
BstDSI	CCRYGG	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	289, 346, 391, 440
CviJI	RGCY	7 cut(s)	19, 57, 100, 282, 330, 395, 450
CviKI_1	RGCY	7 cut(s)	19, 57, 100, 282, 330, 395, 450
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	15, 106
DraIII	CACNNNGTG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	184, 245
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	292, 349, 394, 443
FaiI	YATR	8 cut(s)	277, 290, 314, 347, 392, 437, 441, 446
FatI	CATG	4 cut(s)	288, 345, 390, 439
Fnu4HI	GCNGC	3 cut(s)	98, 283, 328
Fsp4HI	GCNGC	3 cut(s)	98, 283, 328
FspBI	CTAG	2 cut(s)	66, 396
GluI	GCNGC	3 cut(s)	98, 283, 328
Hin1II	CATG	4 cut(s)	292, 349, 394, 443
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	3 cut(s)	22, 128, 305
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	2 cut(s)	15, 106
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	4 cut(s)	292, 349, 394, 443
LpnPI	CCDG	5 cut(s)	39, 318, 440, 451, 467
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	66, 396
MaeII	ACGT	1 cut(s)	405
MbiI	CCGCTC	2 cut(s)	97, 327
MboII	GAAGA	2 cut(s)	50, 243
MluCI	AATT	4 cut(s)	118, 181, 244, 373
MnlI	CCTC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	4 cut(s)	83, 122, 215, 359
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	390
NlaIII	CATG	4 cut(s)	292, 349, 394, 443
PdmI	GAANNNNTTC	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	99, 284, 329
Ppu21I	YACGTR	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	83, 122, 215, 359
SatI	GCNGC	3 cut(s)	98, 283, 328
ScrFI	CCNGG	1 cut(s)	455
SetI	ASST	7 cut(s)	21, 93, 228, 284, 408, 452, 470
SmlI	CTYRAG	2 cut(s)	92, 322
SmoI	CTYRAG	2 cut(s)	92, 322
Sse9I	AATT	4 cut(s)	118, 181, 244, 373
SsiI	CCGC	2 cut(s)	97, 327
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	66, 396
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	412
TasI	AATT	4 cut(s)	118, 181, 244, 373
TauI	GCSGC	2 cut(s)	100, 330
Tru1I	TTAA	4 cut(s)	83, 122, 215, 359
Tru9I	TTAA	4 cut(s)	83, 122, 215, 359
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	243, 367, 371
TspGWI	ACGGA	1 cut(s)	158
XapI	RAATTY	2 cut(s)	181, 244
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	66, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.