Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

57836086 .. 57844275

Gene Structure 8190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAGAAATTGTTTGCTTACTAACGTTTCACATGGTGCCTTATCCGAACTTCAAACCTTCAGTTTGTACGGTAATCAGTTTTCAGGTTTAATCCCCACCAACATCTTCAACTTCTCTGCAGTGCAACTAATTGATCTTACATACAACCAACTATCAGAAATTCCAAAGGAAATTGGCAGTTTAGATCAGCTGGAAGAGATGAGTACACAATCCAATGTCCTAGAAGGGCATCTTCCTAGGACTATCTTCAACATGTCTTCTTTGATTACATTGGCTCTAACAGGAAACAGCTTGAATGGTACTATACCAGATGAGATTGGTGATCTTCCAAAATTGGGTTTAAACAATCTCAATGGCCTCATCCCATCCAGAGTCTTCAATATGCCCACAATACAAACATTTTCTCTTAATCACCTCTCGGGCAATCTCCCTGCAAACTTGTGGCTCGGGATTCCAAACTTGCAAGAATTTTTTGTAGAAGAGAATGAACTCAGCGGACTAATCCCCAACTTCATATCTAATGCTTCCAAGATCACAATGCAAAACTTGGGCCTTAACTCATTTTCAGGGCTTACACCTAGCATAGTTTGTGCCTTAGAAAACCTTCAACGGCTTAACTTACAGAGAAACTATTTGACTATTGATACATCTAGTCCAGAAGTAAACTTTCTCTCTTGTTTGGCCACTCTTAGAGATGTGAGGATATTAGCCTTGTCCTTGAATCCATTAAACACCAGCCTTCCTACTTCCAATTGGAATCTCTCTAGAGTAGAATATATAGATTTAAGCTATAACAACATGAGGGGTGGCATTCCTAGTGATATTGGCAATATGAGCAGCTTGATGACCTTACACCTGGAATACAATCAATTACGTGGACCAATTCAAACTACAATGGGAAGCCTAACGAATCTCCAAGGGTTGTACTTGAATGATAACCAACTGCAAGGGCACATCCCACATGAACTCTGTCAACTAGAAAACCTATTCGACTTACTATTGGGTGGTAATCAACTCTCTGGTTCTATACCTTCCTGTTTAGGAGATCTAGCCACAGCACTAAGAACTCTATCATTGAACTCCAATTTGTTAAATTCCACTATACCATCTACCTTGTGGAGACTCCAATATATCCTTCATGTAAATTTATCATCCAATACTAATTGGCCATCTCTTCGAAGATATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

396

Amino Acids

43.85

Weight (kDa)

5.02

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	12 - 206	1.2e-07	Leucine-rich repeat region
LRR_14	PF23598	223 - 364	2.2e-07	Leucine-rich repeat region
LRR_8	PF13855	280 - 339	2.2e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	495
AclI	AACGTT	1 cut(s)	24
AcoI	YGGCCR	2 cut(s)	681, 1166
AcsI	RAATTY	4 cut(s)	159, 467, 1093, 1144
AcuI	CTGAAG	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	4 cut(s)	68, 205, 301, 926
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	855
AjuI	GAANNNNNNNTTGG	2 cut(s)	1119, 1151
AluBI	AGCT	4 cut(s)	190, 291, 789, 840
AluI	AGCT	4 cut(s)	190, 291, 789, 840
Alw26I	GTCTC	1 cut(s)	1114
Ama87I	CYCGRG	2 cut(s)	418, 446
AoxI	GGCC	4 cut(s)	355, 550, 681, 1166
ApeKI	GCWGC	1 cut(s)	837
ApoI	RAATTY	4 cut(s)	159, 467, 1093, 1144
Asp700I	GAANNNNTTC	1 cut(s)	603
AspA2I	CCTAGG	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	550, 878
AsuHPI	GGTGA	2 cut(s)	332, 404
AsuII	TTCGAA	1 cut(s)	1177
AvaI	CYCGRG	2 cut(s)	418, 446
AvaII	GGWCC	1 cut(s)	878
AvrII	CCTAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	954
BalI	TGGCCA	2 cut(s)	683, 1168
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	249, 367
BbvI	GCAGC	1 cut(s)	849
BccI	CCATC	3 cut(s)	373, 1114, 1177
BceAI	ACGGC	1 cut(s)	626
BciT130I	CCWGG	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	1114
BfaI	CTAG	8 cut(s)	221, 237, 579, 651, 765, 816, 977, 1049
BfmI	CTRYAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	1045
BisI	GCNGC	1 cut(s)	838
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	839
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	2 cut(s)	418, 446
BmgT120I	GGNCC	2 cut(s)	550, 878
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	857
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	249, 367
Bpu14I	TTCGAA	1 cut(s)	1177
BsaAI	YACGTR	1 cut(s)	875
BsaJI	CCNNGG	2 cut(s)	236, 916
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	2 cut(s)	236, 916
BseGI	GGATG	4 cut(s)	360, 365, 954, 1151
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	1 cut(s)	849
BshFI	GGCC	4 cut(s)	357, 552, 683, 1168
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	2 cut(s)	418, 446
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	1114
BsmI	GAATGC	1 cut(s)	810
BsnI	GGCC	4 cut(s)	357, 552, 683, 1168
BsoBI	CYCGRG	2 cut(s)	418, 446
Bsp119I	TTCGAA	1 cut(s)	1177
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	5 cut(s)	133, 184, 322, 531, 1045
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	4 cut(s)	357, 552, 683, 1168
BspCNI	CTCAG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	1177
BspT107I	GGYRCC	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	236, 916
BssMI	GATC	5 cut(s)	133, 184, 322, 531, 1045
BssT1I	CCWWGG	2 cut(s)	236, 916
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	3 cut(s)	189, 474, 1179
BstBAI	YACGTR	1 cut(s)	875
BstBI	TTCGAA	1 cut(s)	1177
BstDEI	CTNAG	4 cut(s)	491, 595, 689, 1061
BstF5I	GGATG	4 cut(s)	360, 365, 954, 1151
BstKTI	GATC	5 cut(s)	136, 187, 325, 534, 1048
BstMAI	GTCTC	1 cut(s)	1114
BstMBI	GATC	5 cut(s)	133, 184, 322, 531, 1045
BstMWI	GCNNNNNNNGC	1 cut(s)	834
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	855
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	954
BstV1I	GCAGC	1 cut(s)	849
BstV2I	GAAGAC	2 cut(s)	249, 367
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
BsuRI	GGCC	4 cut(s)	357, 552, 683, 1168
BtsCI	GGATG	4 cut(s)	360, 365, 954, 1151
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	550, 878
Csp6I	GTAC	4 cut(s)	67, 204, 300, 925
CviAII	CATG	5 cut(s)	32, 253, 799, 962, 1139
CviQI	GTAC	4 cut(s)	67, 204, 300, 925
DdeI	CTNAG	4 cut(s)	491, 595, 689, 1061
DpnI	GATC	5 cut(s)	135, 186, 324, 533, 1047
DpnII	GATC	5 cut(s)	133, 184, 322, 531, 1045
DraI	TTTAAA	1 cut(s)	342
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	681, 1166
Eam1104I	CTCTTC	3 cut(s)	189, 474, 1179
EarI	CTCTTC	3 cut(s)	189, 474, 1179
Eco130I	CCWWGG	2 cut(s)	236, 916
Eco47I	GGWCC	1 cut(s)	878
Eco57I	CTGAAG	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	418, 446
EcoRII	CCWGG	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	236, 916
ErhI	CCWWGG	2 cut(s)	236, 916
FaeI	CATG	5 cut(s)	35, 256, 802, 965, 1142
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	5 cut(s)	31, 252, 798, 961, 1138
Fnu4HI	GCNGC	1 cut(s)	838
FokI	GGATG	4 cut(s)	347, 352, 941, 1138
Fsp4HI	GCNGC	1 cut(s)	838
FspBI	CTAG	8 cut(s)	221, 237, 579, 651, 765, 816, 977, 1049
GluI	GCNGC	1 cut(s)	838
HaeIII	GGCC	4 cut(s)	357, 552, 683, 1168
Hin1II	CATG	5 cut(s)	35, 256, 802, 965, 1142
HincII	GTYRAC	1 cut(s)	974
HindII	GTYRAC	1 cut(s)	974
HinfI	GANTC	6 cut(s)	372, 451, 721, 757, 910, 1122
HphI	GGTGA	2 cut(s)	332, 404
Hpy166II	GTNNAC	4 cut(s)	206, 664, 878, 974
Hpy188I	TCNGA	2 cut(s)	46, 157
Hpy188III	TCNNGA	4 cut(s)	369, 448, 656, 765
Hpy8I	GTNNAC	4 cut(s)	206, 664, 878, 974
HpyAV	CCTTC	6 cut(s)	67, 218, 614, 749, 1041, 1145
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	2 cut(s)	24, 874
HpyCH4V	TGCA	6 cut(s)	119, 124, 434, 463, 541, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	834
HpyF3I	CTNAG	4 cut(s)	491, 595, 689, 1061
HpySE526I	ACGT	2 cut(s)	24, 874
Hsp92II	CATG	5 cut(s)	35, 256, 802, 965, 1142
Kzo9I	GATC	5 cut(s)	133, 184, 322, 531, 1045
Lsp1109I	GCAGC	1 cut(s)	849
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	8 cut(s)	221, 237, 579, 651, 765, 816, 977, 1049
MaeII	ACGT	2 cut(s)	24, 874
MalI	GATC	5 cut(s)	135, 186, 324, 533, 1047
MboI	GATC	5 cut(s)	133, 184, 322, 531, 1045
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	954
MlsI	TGGCCA	2 cut(s)	683, 1168
MluNI	TGGCCA	2 cut(s)	683, 1168
MlyI	GAGTC	2 cut(s)	381, 1116
MnlI	CCTC	4 cut(s)	368, 425, 693, 795
Mox20I	TGGCCA	2 cut(s)	683, 1168
MroXI	GAANNNNTTC	1 cut(s)	603
MscI	TGGCCA	2 cut(s)	683, 1168
MseI	TTAA	8 cut(s)	89, 341, 408, 555, 615, 728, 785, 1091
Msp20I	TGGCCA	2 cut(s)	683, 1168
MspA1I	CMGCKG	2 cut(s)	190, 495
MspR9I	CCNGG	1 cut(s)	857
MssI	GTTTAAAC	1 cut(s)	342
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	857
MwoI	GCNNNNNNNGC	1 cut(s)	834
NdeII	GATC	5 cut(s)	133, 184, 322, 531, 1045
NlaIII	CATG	5 cut(s)	35, 256, 802, 965, 1142
NlaIV	GGNNCC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	1177
PciI	ACATGT	1 cut(s)	252
PctI	GAATGC	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	451, 721, 757, 910
PkrI	GCNGC	1 cut(s)	839
PleI	GAGTC	2 cut(s)	380, 1116
PmeI	GTTTAAAC	1 cut(s)	342
PpsI	GAGTC	2 cut(s)	380, 1116
Ppu21I	YACGTR	1 cut(s)	875
PscI	ACATGT	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	550, 878
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	1045
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	4 cut(s)	68, 205, 301, 926
RsaNI	GTAC	4 cut(s)	67, 204, 300, 925
SaqAI	TTAA	8 cut(s)	89, 341, 408, 555, 615, 728, 785, 1091
SatI	GCNGC	1 cut(s)	838
Sau3AI	GATC	5 cut(s)	133, 184, 322, 531, 1045
Sau96I	GGNCC	2 cut(s)	550, 878
SchI	GAGTC	2 cut(s)	381, 1116
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	1177
SinI	GGWCC	1 cut(s)	878
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	8 cut(s)	221, 237, 579, 651, 765, 816, 977, 1049
StyD4I	CCNGG	1 cut(s)	855
StyI	CCWWGG	2 cut(s)	236, 916
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	2 cut(s)	27, 877
TaqI	TCGA	2 cut(s)	990, 1177
TatI	WGTACW	2 cut(s)	203, 924
TfiI	GAWTC	4 cut(s)	451, 721, 757, 910
Tru1I	TTAA	8 cut(s)	89, 341, 408, 555, 615, 728, 785, 1091
Tru9I	TTAA	8 cut(s)	89, 341, 408, 555, 615, 728, 785, 1091
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	837
TspDTI	ATGAA	4 cut(s)	501, 502, 978, 1127
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	4 cut(s)	159, 467, 1093, 1144
XbaI	TCTAGA	1 cut(s)	764
XceI	RCATGY	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1113
XmaJI	CCTAGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	8 cut(s)	221, 237, 579, 651, 765, 816, 977, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.